ClinVar Miner

List of variants studied for bone development disease by Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein

Included ClinVar conditions (588):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 86
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HGVS dbSNP gnomAD frequency
NM_004608.4(TBX6):c.-49+34G>T rs3809627 0.40816
NM_004608.4(TBX6):c.354-762T>C rs115865007 0.00631
NM_000112.4(SLC26A2):c.835C>T (p.Arg279Trp) rs104893915 0.00106
NM_022356.4(P3H1):c.1080+1G>T rs72659351 0.00068
NM_016004.5(IFT52):c.157G>A (p.Val53Met) rs137979762 0.00043
NM_001395891.1(CLASP1):c.196-567G>A rs559979281 0.00038
NR_023343.3(RNU4ATAC):n.8C>T rs370715569 0.00025
NM_001395413.1(POR):c.850G>C (p.Ala284Pro) rs121912974 0.00023
NR_023343.3(RNU4ATAC):n.37G>A rs756026847 0.00013
NM_006371.5(CRTAP):c.471+2C>A rs137853943 0.00010
NM_006371.5(CRTAP):c.826C>T (p.Gln276Ter) rs72659361 0.00009
NM_001395413.1(POR):c.1816C>T (p.Gln606Ter) rs782261248 0.00006
NM_020928.2(ZSWIM6):c.31G>A (p.Ala11Thr) rs1038709799 0.00006
NM_016004.5(IFT52):c.1189C>T (p.Pro397Ser) rs764053825 0.00004
NM_021939.4(FKBP10):c.1402C>T (p.Arg468Trp) rs542334549 0.00004
NM_000088.4(COL1A1):c.2299G>A (p.Gly767Ser) rs72651658 0.00001
NM_002335.4(LRP5):c.1480C>T (p.Arg494Trp) rs1270099780 0.00001
NM_003036.4(SKI):c.2026C>T (p.His676Tyr) rs1376096484 0.00001
NM_006854.4(KDELR2):c.505C>T (p.Arg169Cys) rs1363157649 0.00001
NM_015909.4(NBAS):c.5297T>C (p.Leu1766Pro) rs1294584287 0.00001
NM_021939.4(FKBP10):c.337G>A (p.Glu113Lys) rs397514674 0.00001
NM_000088.4(COL1A1):c.2990dup (p.Gly998fs) rs1598288648
NM_000088.4(COL1A1):c.3721del (p.Gln1241fs)
NM_000088.4(COL1A1):c.409C>T (p.Gln137Ter)
NM_000088.4(COL1A1):c.769G>A (p.Gly257Arg) rs72645321
NM_000089.4(COL1A2):c.1072G>A (p.Gly358Ser) rs66619856
NM_000089.4(COL1A2):c.1343G>A (p.Gly448Glu) rs72658116
NM_000089.4(COL1A2):c.1531G>T (p.Gly511Cys)
NM_000089.4(COL1A2):c.1801G>A (p.Gly601Ser) rs72658143
NM_000089.4(COL1A2):c.2288G>A (p.Gly763Asp) rs72658179
NM_000089.4(COL1A2):c.2314G>A (p.Gly772Ser) rs72658185
NM_000089.4(COL1A2):c.2701G>T (p.Gly901Cys) rs72659306
NM_000089.4(COL1A2):c.2710G>C (p.Gly904Arg)
NM_000089.4(COL1A2):c.784G>C (p.Gly262Arg) rs1554395970
NM_000089.4(COL1A2):c.874G>T (p.Gly292Cys) rs906553840
NM_000095.3(COMP):c.1285_1286dup (p.Cys430fs)
NM_000095.3(COMP):c.1405GAC[4] (p.Asp473del) rs193922900
NM_000095.3(COMP):c.2092C>T (p.Arg698Ter) rs763098832
NM_000141.5(FGFR2):c.1024T>A (p.Cys342Ser) rs121918488
NM_000141.5(FGFR2):c.1700C>T (p.Ala567Val) rs2133943742
NM_000141.5(FGFR2):c.755C>G (p.Ser252Trp) rs79184941
NM_000142.5(FGFR3):c.1620C>A (p.Asn540Lys) rs28933068
NM_000142.5(FGFR3):c.1620C>G (p.Asn540Lys) rs28933068
NM_000142.5(FGFR3):c.749C>G (p.Pro250Arg) rs4647924
NM_000396.4(CTSK):c.721C>T (p.Arg241Ter) rs74315303
NM_000557.5(GDF5):c.901C>T (p.Arg301Ter) rs74315386
NM_001024630.4(RUNX2):c.524T>G (p.Met175Arg) rs104893989
NM_001025295.3(IFITM5):c.-14C>T rs587776916
NM_001104631.2(PDE4D):c.946C>T (p.Leu316Phe) rs2153344901
NM_001235.5(SERPINH1):c.710T>C (p.Met237Thr) rs886039819
NM_001429.4(EP300):c.3671+1G>A rs2059103511
NM_001844.5(COL2A1):c.1043G>A (p.Gly348Asp) rs2136590361
NM_001852.4(COL9A2):c.1009-2A>C rs2124065362
NM_001854.4(COL11A1):c.2862+3A>G
NM_001854.4(COL11A1):c.3762G>C (p.Lys1254Asn)
NM_002335.4(LRP5):c.787T>C (p.Cys263Arg) rs2153139472
NM_003036.4(SKI):c.1754G>A (p.Arg585His) rs1251950898
NM_003722.5(TP63):c.1670G>T (p.Gly557Val) rs2108864735
NM_003995.4(NPR2):c.1117T>C (p.Tyr373His)
NM_004247.4(EFTUD2):c.1177C>G (p.Pro393Ala)
NM_004260.4(RECQL4):c.-1C>T
NM_004273.5(CHST3):c.1109G>A (p.Arg370His) rs1355385307
NM_004273.5(CHST3):c.141-1_141inv
NM_004380.3(CREBBP):c.3832G>A (p.Glu1278Lys) rs267606752
NM_004380.3(CREBBP):c.4804C>A (p.Arg1602Ser) rs2151319330
NM_004608.4(TBX6):c.373C>T (p.Arg125Ter)
NM_005430.4(WNT1):c.860dup (p.His287fs) rs2137625424
NM_005515.4(MNX1):c.852+1G>A rs1563700419
NM_005529.7(HSPG2):c.11890G>A (p.Gly3964Arg)
NM_005529.7(HSPG2):c.6259C>T (p.Arg2087Ter)
NM_006371.5(CRTAP):c.452T>C (p.Leu151Pro) rs1405064021
NM_007317.3(KIF22):c.443C>T (p.Pro148Leu) rs193922921
NM_012330.4(KAT6B):c.3255AGA[3] (p.Glu1089_Asp1090insGlu)
NM_012330.4(KAT6B):c.3590del (p.Pro1197fs)
NM_012330.4(KAT6B):c.5698A>G (p.Met1900Val)
NM_015425.6(POLR1A):c.1612-3dup
NM_017633.3(TENT5A):c.749dup (p.Met251fs) rs2127726557
NM_020223.4(FAM20C):c.600G>C (p.Pro200=) rs201631664
NM_020436.5(SALL4):c.2977G>T (p.Gly993Trp) rs138891224
NM_020754.4(ARHGAP31):c.2471C>T (p.Ser824Phe) rs1395872373
NM_021224.6(ZNF462):c.3478G>A (p.Val1160Ile)
NM_021224.6(ZNF462):c.4147G>C (p.Asp1383His)
NM_021939.4(FKBP10):c.1276dup (p.Gln426fs) rs1567856056
NM_022356.4(P3H1):c.2209T>C (p.Ter737Arg)
NM_022356.4(P3H1):c.927del (p.Phe309fs)
NM_032888.4(COL27A1):c.2320C>T (p.Arg774Ter) rs1465820080

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