ClinVar Miner

List of variants reported as benign for renal cell adenocarcinoma

Included ClinVar conditions (32):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 133
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HGVS dbSNP gnomAD frequency
NM_000545.8(HNF1A):c.1720A>G (p.Ser574Gly) rs1169305 0.98610
NM_019040.5(ELP4):c.927+4C>A rs4922872 0.98610
NM_000280.4(PAX6):c.*3202G>A rs608293 0.88020
NM_000280.4(PAX6):c.*2893_*2896dupATTT rs397795797 0.87931
NM_000280.4(PAX6):c.*1184A>T rs1506 0.72043
NM_000280.4(PAX6):c.*3958G>A rs3026401 0.70691
NM_000245.4(MET):c.*1428G>A rs1621 0.63315
NM_000546.6(TP53):c.215C>G (p.Pro72Arg) rs1042522 0.62654
NM_000280.4(PAX6):c.*2160G>A rs12421026 0.42881
NM_000545.8(HNF1A):c.51C>G (p.Leu17=) rs1169289 0.42543
NM_000545.8(HNF1A):c.79A>C (p.Ile27Leu) rs1169288 0.35489
NM_000245.4(MET):c.*2240G>A rs6566 0.34157
NM_000245.4(MET):c.4092G>A (p.Pro1364=) rs41737 0.34093
NM_000245.4(MET):c.*1028A>G rs41738 0.34071
NM_000245.4(MET):c.4017G>A (p.Ala1339=) rs2023748 0.34017
NM_000245.4(MET):c.*1326A>G rs41739 0.34010
NM_000245.4(MET):c.3858C>T (p.Asp1286=) rs41736 0.33828
NM_000545.8(HNF1A):c.1501+7G>A rs2464195 0.30441
NM_000545.8(HNF1A):c.1460G>A (p.Ser487Asn) rs2464196 0.26206
NM_000545.8(HNF1A):c.1375C>T (p.Leu459=) rs2259820 0.26141
NM_000545.8(HNF1A):c.864G>C (p.Gly288=) rs56348580 0.25042
NM_000280.4(PAX6):c.*2707C>T rs3026398 0.22983
NM_000245.4(MET):c.1944A>G (p.Gln648=) rs13223756 0.16754
NC_000011.10:g.31787522C>T rs662702 0.14929
NM_000545.8(HNF1A):c.1545G>A (p.Thr515=) rs55834942 0.13864
NM_017583.6(TRIM44):c.670-27G>C rs3740798 0.13698
NM_017583.6(TRIM44):c.*23A>G rs61881297 0.12522
NM_000245.4(MET):c.534C>T (p.Ser178=) rs35775721 0.07211
NM_001368894.2(PAX6):c.808-12C>T rs667773 0.05916
NM_000245.4(MET):c.*684G>A rs12540703 0.05662
NM_000280.4(PAX6):c.*4296G>C rs16922475 0.05615
NM_000245.4(MET):c.1131C>T (p.Ile377=) rs28444388 0.05590
NM_000280.4(PAX6):c.*2901T>C rs542906080 0.04927
NM_000245.4(MET):c.144G>A (p.Ala48=) rs11762213 0.03399
NM_000280.4(PAX6):c.*3736_*3737delCA rs141022497 0.02792
NM_000280.4(PAX6):c.*2305G>A rs73477656 0.02650
NM_000245.4(MET):c.*216C>A rs149188493 0.02223
NM_000545.8(HNF1A):c.293C>T (p.Ala98Val) rs1800574 0.02065
NM_000245.4(MET):c.1124A>G (p.Asn375Ser) rs33917957 0.01723
NM_001368894.2(PAX6):c.*842G>A rs115045926 0.01172
NM_000245.4(MET):c.-14-13C>T rs36080330 0.00978
NM_000280.4(PAX6):c.*2559G>A rs141344418 0.00935
NM_000245.4(MET):c.2975C>T (p.Thr992Ile) rs56391007 0.00911
NM_000280.4(PAX6):c.*2416G>T rs79739975 0.00857
NM_000280.4(PAX6):c.*2985G>A rs3026399 0.00813
NM_001368894.2(PAX6):c.*417C>T rs55756603 0.00810
NM_000545.8(HNF1A):c.326+20C>A rs80051981 0.00772
NM_000458.4(HNF1B):c.345-19C>T rs59527848 0.00765
NM_000245.4(MET):c.1085T>C (p.Met362Thr) rs77523018 0.00742
NM_000245.4(MET):c.390C>T (p.Leu130=) rs150588908 0.00740
NM_000280.4(PAX6):c.*2238T>G rs73477658 0.00701
NM_000245.4(MET):c.948A>G (p.Ile316Met) rs35225896 0.00641
NM_000245.4(MET):c.*2202G>A rs14456 0.00515
NM_000245.4(MET):c.*1987C>T rs76322625 0.00499
NM_000245.4(MET):c.504G>T (p.Glu168Asp) rs55985569 0.00420
NM_000280.4(PAX6):c.*3670C>T rs149777109 0.00394
NM_000245.4(MET):c.*1220G>A rs139535303 0.00336
NM_000245.4(MET):c.-14-4G>A rs144126521 0.00331
NM_000245.4(MET):c.2908C>T (p.Arg970Cys) rs34589476 0.00327
NM_000458.4(HNF1B):c.1413C>T (p.Pro471=) rs140781855 0.00325
NM_000280.4(PAX6):c.*3168C>T rs187705792 0.00303
NM_000245.4(MET):c.*787G>A rs143472935 0.00290
NM_000245.4(MET):c.*231T>G rs59399612 0.00287
NM_000245.4(MET):c.*1010G>T rs150534017 0.00272
NM_000545.8(HNF1A):c.276C>T (p.Leu92=) rs34056805 0.00269
NM_000245.4(MET):c.*87G>A rs41281081 0.00250
NM_000245.4(MET):c.3522T>C (p.His1174=) rs146651797 0.00243
NM_000280.4(PAX6):c.*2697T>A rs138881442 0.00236
NM_000245.4(MET):c.*385G>A rs181068390 0.00235
NM_000280.4(PAX6):c.*1063A>G rs117590302 0.00220
NM_000545.8(HNF1A):c.252C>T (p.Pro84=) rs78772552 0.00215
NM_000280.4(PAX6):c.*1478C>T rs181818313 0.00198
NM_000280.4(PAX6):c.*4370C>G rs183115097 0.00194
NM_000245.4(MET):c.*201C>T rs1129355 0.00192
NM_000280.4(PAX6):c.*2506C>T rs3026397 0.00189
NM_000245.4(MET):c.1715G>A (p.Ser572Asn) rs199771406 0.00188
NM_000245.4(MET):c.*2100C>T rs190739281 0.00165
NM_000245.4(MET):c.*1871G>A rs139377965 0.00152
NM_000245.4(MET):c.*1224C>T rs149713628 0.00150
NM_000280.4(PAX6):c.*1436G>A rs138035131 0.00148
NM_000546.6(TP53):c.139C>T (p.Pro47Ser) rs1800371 0.00123
NM_000280.4(PAX6):c.*5108A>G rs146579778 0.00120
NM_001368894.2(PAX6):c.-107C>T rs111270711 0.00117
NM_000245.4(MET):c.*656G>A rs531456758 0.00104
NM_000280.4(PAX6):c.*3885G>T rs183433948 0.00096
NM_000245.4(MET):c.*602C>T rs147343288 0.00093
NM_000245.4(MET):c.*944A>G rs565768785 0.00076
NM_000280.4(PAX6):c.*3428C>T rs191399467 0.00076
NM_001368894.2(PAX6):c.873G>A (p.Gln291=) rs149053004 0.00075
NM_000245.4(MET):c.3549C>T (p.Gly1183=) rs371165052 0.00074
NM_000245.4(MET):c.1039G>A (p.Ala347Thr) rs200074800 0.00068
NM_001368894.2(PAX6):c.*891G>A rs530259403 0.00065
NM_000245.4(MET):c.467C>T (p.Ser156Leu) rs56311081 0.00061
NM_000545.8(HNF1A):c.210C>T (p.Ser70=) rs146686581 0.00061
NM_000280.4(PAX6):c.*2882T>C rs143185259 0.00060
NM_000245.4(MET):c.406G>A (p.Val136Ile) rs199701987 0.00058
NM_000245.4(MET):c.3523-12C>G rs186524917 0.00053
NM_000245.4(MET):c.3810C>T (p.Gly1270=) rs200865810 0.00039
NM_001368894.2(PAX6):c.1179A>C (p.Thr393=) rs143477661 0.00038
NM_001368894.2(PAX6):c.753G>A (p.Val251=) rs145329506 0.00038
NM_001368894.2(PAX6):c.*841C>T rs530931929 0.00031
NM_000280.4(PAX6):c.*4627A>C rs140971065 0.00030
NM_000245.4(MET):c.1191C>T (p.Cys397=) rs35763409 0.00028
NM_000245.4(MET):c.4105T>C (p.Leu1369=) rs45575438 0.00021
NM_000245.4(MET):c.3522+12G>T rs200624981 0.00019
NM_000245.4(MET):c.1263C>T (p.Thr421=) rs45499391 0.00016
NM_000245.4(MET):c.4087G>A (p.Ala1363Thr) rs45578433 0.00016
NM_000458.4(HNF1B):c.73G>T (p.Val25Leu) rs139107479 0.00015
NM_144997.7(FLCN):c.1538+10A>C rs12451312 0.00010
NM_000245.4(MET):c.110T>C (p.Val37Ala) rs201315884 0.00009
NM_000245.4(MET):c.960G>A (p.Ala320=) rs191198682 0.00007
NM_000245.4(MET):c.36C>T (p.Leu12=) rs188625702 0.00006
NM_000245.4(MET):c.4075G>A (p.Val1359Ile) rs752669237 0.00006
NM_000280.4(PAX6):c.*3318A>G rs371438311 0.00006
NM_000245.4(MET):c.3065G>A (p.Arg1022Gln) rs45612435 0.00005
NM_000280.4(PAX6):c.*3746C>T rs567720234 0.00005
NM_001368894.2(PAX6):c.909T>C (p.Ser303=) rs202154006 0.00004
NM_000245.4(MET):c.*397A>G rs559231345 0.00003
NM_000245.4(MET):c.690G>A (p.Thr230=) rs200138253 0.00003
NM_000245.4(MET):c.1965+14T>C rs543293293 0.00002
NM_000280.4(PAX6):c.*4696G>C rs180780893 0.00002
NM_001368894.2(PAX6):c.-316-8C>G rs566281941 0.00002
NM_000545.8(HNF1A):c.-4A>G rs561269721 0.00001
NM_000245.4(MET):c.*1233G>A rs560568639
NM_000245.4(MET):c.*1244G>A rs144559852
NM_000245.4(MET):c.*376G>T rs553602374
NM_000245.4(MET):c.-182C>A rs536603694
NM_000245.4(MET):c.1701+58dup rs112241458
NM_000245.4(MET):c.1701+59G>T rs759007523
NM_000245.4(MET):c.2584-9del rs57349036
NM_000280.4(PAX6):c.*3246_*3247insTTTT rs34919147
NM_000280.4(PAX6):c.*4599T>G rs185968715
NM_144997.7(FLCN):c.75G>A (p.Leu25=) rs200350612

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