ClinVar Miner

List of variants in gene SCN9A reported as likely benign for brain disorder

Included ClinVar conditions (1840):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 129
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HGVS dbSNP gnomAD frequency
NM_001365536.1(SCN9A):c.468-20C>T rs199609865 0.00013
NM_001365536.1(SCN9A):c.468-8G>T rs200399998 0.00011
NM_001365536.1(SCN9A):c.259-17T>A rs201599943 0.00010
NM_001365536.1(SCN9A):c.689-6T>C rs201905108 0.00010
NM_001365536.1(SCN9A):c.328T>C (p.Ser110Pro) rs201503351 0.00009
NM_001365536.1(SCN9A):c.361A>C (p.Lys121Gln) rs200486515 0.00009
NM_001365536.1(SCN9A):c.213G>A (p.Val71=) rs200240989 0.00008
NM_001365536.1(SCN9A):c.258+14G>A rs202109432 0.00008
NM_001365536.1(SCN9A):c.393C>T (p.Leu131=) rs199756028 0.00007
NM_001365536.1(SCN9A):c.29A>G (p.Gln10Arg) rs267607030 0.00006
NM_001365536.1(SCN9A):c.377+20T>G rs372559804 0.00006
NM_001365536.1(SCN9A):c.561G>A (p.Pro187=) rs200182914 0.00006
NM_001365536.1(SCN9A):c.642A>G (p.Arg214=) rs376908183 0.00006
NM_001365536.1(SCN9A):c.672T>A (p.Thr224=) rs968362489 0.00005
NM_001365536.1(SCN9A):c.774G>A (p.Val258=) rs753648561 0.00005
NM_001365536.1(SCN9A):c.830G>A (p.Arg277Gln) rs146758972 0.00005
NM_001365536.1(SCN9A):c.536G>A (p.Gly179Glu) rs553375250 0.00004
NM_001365536.1(SCN9A):c.822A>G (p.Lys274=) rs199784484 0.00004
NM_001365536.1(SCN9A):c.876C>T (p.Thr292=) rs1395610209 0.00004
NM_001365536.1(SCN9A):c.183C>T (p.Phe61=) rs267598977 0.00003
NM_001365536.1(SCN9A):c.228G>A (p.Glu76=) rs545277826 0.00003
NM_001365536.1(SCN9A):c.829C>A (p.Arg277=) rs121908916 0.00003
NM_001365536.1(SCN9A):c.467+16T>C rs761116601 0.00002
NM_001365536.1(SCN9A):c.576T>C (p.Asp192=) rs762966087 0.00002
NM_001365536.1(SCN9A):c.180C>T (p.Pro60=) rs188383084 0.00001
NM_001365536.1(SCN9A):c.189T>C (p.Tyr63=) rs1306352696 0.00001
NM_001365536.1(SCN9A):c.192G>A (p.Gly64=) rs1355210090 0.00001
NM_001365536.1(SCN9A):c.204C>T (p.Pro68=) rs1011434055 0.00001
NM_001365536.1(SCN9A):c.265A>G (p.Ile89Val) rs201577842 0.00001
NM_001365536.1(SCN9A):c.270A>G (p.Val90=) rs1248310095 0.00001
NM_001365536.1(SCN9A):c.377+10T>C rs752694131 0.00001
NM_001365536.1(SCN9A):c.378-10T>C rs1351935203 0.00001
NM_001365536.1(SCN9A):c.48A>G (p.Thr16=) rs955273218 0.00001
NM_001365536.1(SCN9A):c.498A>G (p.Glu166=) rs961674589 0.00001
NM_001365536.1(SCN9A):c.507A>G (p.Val169=) rs778674007 0.00001
NM_001365536.1(SCN9A):c.582C>T (p.Val194=) rs374594002 0.00001
NM_001365536.1(SCN9A):c.600T>C (p.Tyr200=) rs551400406 0.00001
NM_001365536.1(SCN9A):c.688+8G>C rs199576878 0.00001
NM_001365536.1(SCN9A):c.750C>A (p.Ile250=) rs1055160615 0.00001
NM_001365536.1(SCN9A):c.849T>C (p.Asn283=) rs781539021 0.00001
NM_001365536.1(SCN9A):c.891A>G (p.Glu297=) rs962467971 0.00001
NM_001365536.1(SCN9A):c.114A>G (p.Glu38=) rs1698963924
NM_001365536.1(SCN9A):c.126T>C (p.Asp42=) rs371884028
NM_001365536.1(SCN9A):c.12G>A (p.Leu4=)
NM_001365536.1(SCN9A):c.153T>A (p.Ser51Arg) rs199836776
NM_001365536.1(SCN9A):c.153T>C (p.Ser51=) rs199836776
NM_001365536.1(SCN9A):c.177G>T (p.Leu59=) rs1698960327
NM_001365536.1(SCN9A):c.192G>T (p.Gly64=) rs1355210090
NM_001365536.1(SCN9A):c.198T>C (p.Ile66=)
NM_001365536.1(SCN9A):c.216A>G (p.Ser72=) rs1574913369
NM_001365536.1(SCN9A):c.222C>T (p.Pro74=)
NM_001365536.1(SCN9A):c.223C>T (p.Leu75=) rs201563763
NM_001365536.1(SCN9A):c.237C>T (p.Asp79=) rs771304275
NM_001365536.1(SCN9A):c.240C>T (p.Pro80=) rs202165845
NM_001365536.1(SCN9A):c.246T>C (p.Tyr82=)
NM_001365536.1(SCN9A):c.252C>T (p.Asp84=)
NM_001365536.1(SCN9A):c.258+12T>G rs2105226214
NM_001365536.1(SCN9A):c.258+14G>C
NM_001365536.1(SCN9A):c.259-12T>G rs2106528242
NM_001365536.1(SCN9A):c.259-16_259-13del
NM_001365536.1(SCN9A):c.259-19T>A
NM_001365536.1(SCN9A):c.259-5T>C rs2106528229
NM_001365536.1(SCN9A):c.259-9C>G rs778321318
NM_001365536.1(SCN9A):c.261T>A (p.Thr87=)
NM_001365536.1(SCN9A):c.267A>C (p.Ile89=) rs200809157
NM_001365536.1(SCN9A):c.276C>T (p.Asn92=) rs2106528144
NM_001365536.1(SCN9A):c.279A>G (p.Lys93=)
NM_001365536.1(SCN9A):c.297T>C (p.Arg99=) rs1553496709
NM_001365536.1(SCN9A):c.306C>T (p.Ala102=) rs1478644619
NM_001365536.1(SCN9A):c.312T>G (p.Pro104=) rs1553496689
NM_001365536.1(SCN9A):c.345A>G (p.Leu115=)
NM_001365536.1(SCN9A):c.378-11T>C
NM_001365536.1(SCN9A):c.378-20G>T
NM_001365536.1(SCN9A):c.396C>T (p.Ile132=) rs1553496455
NM_001365536.1(SCN9A):c.405T>C (p.Thr135=) rs2106527337
NM_001365536.1(SCN9A):c.438T>C (p.Asn146=) rs991437392
NM_001365536.1(SCN9A):c.467+16T>A
NM_001365536.1(SCN9A):c.467+18C>T
NM_001365536.1(SCN9A):c.467+19A>G
NM_001365536.1(SCN9A):c.467+9G>A rs1574906398
NM_001365536.1(SCN9A):c.468-10T>C rs2106526484
NM_001365536.1(SCN9A):c.468-12T>C
NM_001365536.1(SCN9A):c.468-18A>G
NM_001365536.1(SCN9A):c.480T>C (p.Thr160=)
NM_001365536.1(SCN9A):c.492T>G (p.Thr164=)
NM_001365536.1(SCN9A):c.513C>A (p.Ile171=) rs1274327096
NM_001365536.1(SCN9A):c.543C>T (p.Phe181=)
NM_001365536.1(SCN9A):c.558C>T (p.Asp186=)
NM_001365536.1(SCN9A):c.561G>T (p.Pro187=)
NM_001365536.1(SCN9A):c.573G>A (p.Leu191=)
NM_001365536.1(SCN9A):c.588T>C (p.Ile196=) rs1574905360
NM_001365536.1(SCN9A):c.596+10T>G
NM_001365536.1(SCN9A):c.596+14G>A
NM_001365536.1(SCN9A):c.596+9T>A
NM_001365536.1(SCN9A):c.597-19T>C rs2106524132
NM_001365536.1(SCN9A):c.624C>G (p.Gly208=)
NM_001365536.1(SCN9A):c.633A>C (p.Ser211=) rs934321027
NM_001365536.1(SCN9A):c.639T>A (p.Leu213=)
NM_001365536.1(SCN9A):c.655T>C (p.Leu219=) rs2106523988
NM_001365536.1(SCN9A):c.672T>C (p.Thr224=)
NM_001365536.1(SCN9A):c.672T>G (p.Thr224=) rs968362489
NM_001365536.1(SCN9A):c.688+19G>C rs1317730610
NM_001365536.1(SCN9A):c.688+8G>T
NM_001365536.1(SCN9A):c.689-12T>C
NM_001365536.1(SCN9A):c.689-15T>C
NM_001365536.1(SCN9A):c.689-16T>G
NM_001365536.1(SCN9A):c.689-17T>C
NM_001365536.1(SCN9A):c.689-20C>A rs112644902
NM_001365536.1(SCN9A):c.689-6T>A rs201905108
NM_001365536.1(SCN9A):c.690_691delinsAT (p.Gly230_Leu231=) rs1553495271
NM_001365536.1(SCN9A):c.69T>C (p.Ile23=) rs764347894
NM_001365536.1(SCN9A):c.708G>A (p.Gly236=)
NM_001365536.1(SCN9A):c.723A>T (p.Ser241=) rs200518320
NM_001365536.1(SCN9A):c.72A>G (p.Glu24=)
NM_001365536.1(SCN9A):c.750C>T (p.Ile250=) rs1055160615
NM_001365536.1(SCN9A):c.751C>T (p.Leu251=)
NM_001365536.1(SCN9A):c.768G>C (p.Leu256=)
NM_001365536.1(SCN9A):c.780A>G (p.Ala260=) rs2106522354
NM_001365536.1(SCN9A):c.78C>T (p.Arg26=) rs2105227074
NM_001365536.1(SCN9A):c.798G>A (p.Leu266=) rs200925482
NM_001365536.1(SCN9A):c.828T>C (p.Phe276=)
NM_001365536.1(SCN9A):c.831A>G (p.Arg277=) rs975428588
NM_001365536.1(SCN9A):c.846T>C (p.Asn282=) rs748301976
NM_001365536.1(SCN9A):c.873T>C (p.Asn291=) rs2106522149
NM_001365536.1(SCN9A):c.879A>G (p.Leu293=) rs199737519
NM_001365536.1(SCN9A):c.882G>A (p.Glu294=) rs1553495084
NM_001365536.1(SCN9A):c.901+14T>C
NM_001365536.1(SCN9A):c.901+15G>T
NM_001365536.1(SCN9A):c.90A>G (p.Arg30=) rs2105227038

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