ClinVar Miner

List of variants reported as benign for epithelial neoplasm by KCCC/NGS Laboratory, Kuwait Cancer Control Center

Included ClinVar conditions (286):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 191
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HGVS dbSNP gnomAD frequency
NM_003977.4(AIP):c.682C>A (p.Gln228Lys) rs641081 0.84113
NM_020975.6(RET):c.3187+47T>C rs2075912 0.84041
NM_000465.4(BARD1):c.1518T>C (p.His506=) rs2070093 0.74904
NM_020975.6(RET):c.1296A>G (p.Ala432=) rs1800860 0.74268
NM_032043.3(BRIP1):c.2637A>G (p.Glu879=) rs4986765 0.74166
NM_032043.3(BRIP1):c.2755T>C (p.Ser919Pro) rs4986764 0.61453
NM_032043.3(BRIP1):c.3411T>C (p.Tyr1137=) rs4986763 0.60694
NM_000465.4(BARD1):c.1134G>C (p.Arg378Ser) rs2229571 0.53291
NM_001166108.2(PALLD):c.1965-12625A>G rs62333013 0.49745
NM_000545.8(HNF1A):c.51C>G (p.Leu17=) rs1169289 0.42543
NM_000465.4(BARD1):c.1315-19G>A rs6704780 0.37148
NM_000545.8(HNF1A):c.79A>C (p.Ile27Leu) rs1169288 0.35489
NM_000465.4(BARD1):c.1568+14C>T rs5031011 0.34966
NM_000245.4(MET):c.4092G>A (p.Pro1364=) rs41737 0.34093
NM_000245.4(MET):c.4017G>A (p.Ala1339=) rs2023748 0.34017
NM_000245.4(MET):c.3858C>T (p.Asp1286=) rs41736 0.33828
NM_000465.4(BARD1):c.70C>T (p.Pro24Ser) rs1048108 0.32854
NM_000545.8(HNF1A):c.1501+7G>A rs2464195 0.30441
NM_001166108.2(PALLD):c.678C>T (p.Asp226=) rs7673220 0.29605
NM_001166108.2(PALLD):c.186G>A (p.Lys62=) rs1806729 0.29323
NM_000545.8(HNF1A):c.1460G>A (p.Ser487Asn) rs2464196 0.26206
NM_000545.8(HNF1A):c.1375C>T (p.Leu459=) rs2259820 0.26141
NM_177438.3(DICER1):c.4206+9G>T rs1778057 0.25695
NM_000545.8(HNF1A):c.864G>C (p.Gly288=) rs56348580 0.25042
NM_001166108.2(PALLD):c.18C>T (p.Ser6=) rs61051061 0.21059
NM_020975.6(RET):c.337+9G>A rs2435351 0.20641
NM_020975.6(RET):c.2608-24G>A rs2472737 0.20380
NM_000465.4(BARD1):c.1053G>C (p.Thr351=) rs2070096 0.19573
NM_020975.6(RET):c.2284+47C>T rs760466 0.18873
NM_005732.4(RAD50):c.551+19G>A rs17166050 0.17902
NM_020975.6(RET):c.2712C>G (p.Ser904=) rs1800863 0.17043
NM_000245.4(MET):c.1944A>G (p.Gln648=) rs13223756 0.16754
NM_020975.6(RET):c.2071G>A (p.Gly691Ser) rs1799939 0.16640
NM_032043.3(BRIP1):c.508-31C>G rs4988344 0.15259
NM_000545.8(HNF1A):c.1545G>A (p.Thr515=) rs55834942 0.13864
NM_001166108.2(PALLD):c.2679A>G (p.Arg893=) rs1059444 0.12743
NM_001166108.2(PALLD):c.1274C>A (p.Thr425Asn) rs62333891 0.12308
NM_000051.4(ATM):c.5557G>A (p.Asp1853Asn) rs1801516 0.10783
NM_001166108.2(PALLD):c.789C>T (p.Ser263=) rs72695199 0.09674
NM_000245.4(MET):c.534C>T (p.Ser178=) rs35775721 0.07211
NM_000051.4(ATM):c.378T>A (p.Asp126Glu) rs2234997 0.06244
NM_000051.4(ATM):c.4777-20A>G rs3218678 0.06221
NM_000245.4(MET):c.1131C>T (p.Ile377=) rs28444388 0.05590
NM_005732.4(RAD50):c.3846T>C (p.Tyr1282=) rs1804670 0.05209
NM_007194.4(CHEK2):c.252A>G (p.Glu84=) rs1805129 0.04009
NM_001166108.2(PALLD):c.1347C>T (p.Asn449=) rs17054482 0.03942
NM_020975.6(RET):c.2508C>T (p.Ser836=) rs1800862 0.03791
NM_177438.3(DICER1):c.4680G>A (p.Ala1560=) rs61729797 0.03654
NM_177438.3(DICER1):c.3033G>A (p.Ala1011=) rs8019857 0.03643
NM_000245.4(MET):c.144G>A (p.Ala48=) rs11762213 0.03399
NM_000051.4(ATM):c.4578C>T (p.Pro1526=) rs1800889 0.03196
NM_003977.4(AIP):c.516C>T (p.Asp172=) rs2276020 0.03152
NM_032043.3(BRIP1):c.94-18T>G rs2138005 0.03086
NM_000051.4(ATM):c.3403-15T>A rs79701258 0.02975
NM_000051.4(ATM):c.657T>C (p.Cys219=) rs2235003 0.02841
NM_020975.6(RET):c.1264-5C>T rs9282835 0.02749
NM_005732.4(RAD50):c.2025C>T (p.Asp675=) rs34147298 0.02660
NM_005732.4(RAD50):c.214-44G>A rs74769721 0.02590
NM_000051.4(ATM):c.1254A>G (p.Gln418=) rs4987943 0.02542
NM_000051.4(ATM):c.8786+8A>C rs4986839 0.02488
NM_003977.4(AIP):c.132C>T (p.Asp44=) rs11822907 0.02357
NM_001166108.2(PALLD):c.1527T>G (p.Ala509=) rs58395080 0.02196
NM_000051.4(ATM):c.5497-8T>C rs3092829 0.02183
NM_000051.4(ATM):c.2639-17G>T rs2234994 0.02161
NM_000051.4(ATM):c.4138C>T (p.His1380Tyr) rs3092856 0.02156
NM_000465.4(BARD1):c.1933T>C (p.Cys645Arg) rs2228456 0.02135
NM_000545.8(HNF1A):c.293C>T (p.Ala98Val) rs1800574 0.02065
NM_000051.4(ATM):c.1541G>A (p.Gly514Asp) rs2235000 0.01889
NM_005732.4(RAD50):c.1052-38C>T rs104895045 0.01852
NM_177438.3(DICER1):c.2997T>G (p.Leu999=) rs12018992 0.01764
NM_000245.4(MET):c.1124A>G (p.Asn375Ser) rs33917957 0.01723
NM_000051.4(ATM):c.186-17A>G rs4987907 0.01587
NM_007194.4(CHEK2):c.1542+11T>A rs17881716 0.01583
NM_020975.6(RET):c.2944C>T (p.Arg982Cys) rs17158558 0.01567
NM_000051.4(ATM):c.2193C>T (p.Tyr731=) rs2229019 0.01543
NM_000051.4(ATM):c.1636C>G (p.Leu546Val) rs2227924 0.01541
NM_000051.4(ATM):c.3161C>G (p.Pro1054Arg) rs1800057 0.01452
NM_000465.4(BARD1):c.1670G>C (p.Cys557Ser) rs28997576 0.01443
NM_177438.3(DICER1):c.3198T>C (p.Thr1066=) rs114964211 0.01414
NM_000051.4(ATM):c.6095+15T>C rs3212321 0.01395
NM_000051.4(ATM):c.2614C>T (p.Pro872Ser) rs3218673 0.01393
NM_000051.4(ATM):c.2685A>G (p.Leu895=) rs3218687 0.01393
NM_000051.4(ATM):c.6572+12G>T rs3218677 0.01112
NM_000051.4(ATM):c.735C>T (p.Val245=) rs3218674 0.01085
NM_020975.6(RET):c.868-18G>A rs57098408 0.01028
NM_177438.3(DICER1):c.1935G>A (p.Pro645=) rs61751177 0.00958
NM_020975.6(RET):c.375C>A (p.Val125=) rs1800859 0.00877
NM_000051.4(ATM):c.2922-21T>G rs149096247 0.00835
NM_177438.3(DICER1):c.1887G>A (p.Thr629=) rs141651702 0.00806
NM_000465.4(BARD1):c.609A>C (p.Gly203=) rs28997574 0.00787
NM_000051.4(ATM):c.2119T>C (p.Ser707Pro) rs4986761 0.00782
NM_177438.3(DICER1):c.2370G>A (p.Arg790=) rs112712209 0.00777
NM_000545.8(HNF1A):c.326+20C>A rs80051981 0.00772
NM_000458.4(HNF1B):c.345-19C>T rs59527848 0.00765
NM_000051.4(ATM):c.544G>C (p.Val182Leu) rs3218707 0.00757
NM_000465.4(BARD1):c.2212A>G (p.Ile738Val) rs61754118 0.00745
NM_000245.4(MET):c.1085T>C (p.Met362Thr) rs77523018 0.00742
NM_000245.4(MET):c.390C>T (p.Leu130=) rs150588908 0.00740
NM_000465.4(BARD1):c.1972C>T (p.Arg658Cys) rs3738888 0.00736
NM_000051.4(ATM):c.146C>G (p.Ser49Cys) rs1800054 0.00712
NM_000051.4(ATM):c.6995T>C (p.Leu2332Pro) rs4988111 0.00660
NM_000051.4(ATM):c.6235G>A (p.Val2079Ile) rs1800060 0.00649
NM_000051.4(ATM):c.3383A>G (p.Gln1128Arg) rs2229020 0.00636
NM_005732.4(RAD50):c.3037-3T>C rs115737081 0.00627
NM_000051.4(ATM):c.5793T>C (p.Ala1931=) rs3092910 0.00608
NM_032043.3(BRIP1):c.206-21T>C rs2048717 0.00589
NM_177438.3(DICER1):c.5095+13C>T rs116247322 0.00577
NM_000051.4(ATM):c.186-7C>T rs55674039 0.00568
NM_007194.4(CHEK2):c.1343T>G (p.Ile448Ser) rs17886163 0.00555
NM_177438.3(DICER1):c.5241G>A (p.Ser1747=) rs114861074 0.00539
NM_000051.4(ATM):c.6088A>G (p.Ile2030Val) rs145847315 0.00517
NM_001166108.2(PALLD):c.1965-12953C>T rs528879194 0.00493
NM_032043.3(BRIP1):c.2236A>G (p.Ile746Val) rs111536363 0.00480
NM_003620.4(PPM1D):c.456C>T (p.Ala152=) rs149400522 0.00475
NM_005732.4(RAD50):c.572C>T (p.Thr191Ile) rs2230017 0.00469
NM_000465.4(BARD1):c.1738G>A (p.Glu580Lys) rs35306212 0.00455
NM_000051.4(ATM):c.1810C>T (p.Pro604Ser) rs2227922 0.00431
NM_000051.4(ATM):c.6437G>C (p.Ser2146Thr) rs56815840 0.00424
NM_005732.4(RAD50):c.2910C>T (p.Asp970=) rs148269640 0.00422
NM_000245.4(MET):c.504G>T (p.Glu168Asp) rs55985569 0.00420
NM_000051.4(ATM):c.5005+18G>A rs76290788 0.00414
NM_000051.4(ATM):c.1176C>G (p.Gly392=) rs1800727 0.00388
NM_000051.4(ATM):c.5497-15G>C rs3092828 0.00363
NM_032043.3(BRIP1):c.517C>T (p.Arg173Cys) rs4988345 0.00363
NM_000458.4(HNF1B):c.1413C>T (p.Pro471=) rs140781855 0.00325
NM_005732.4(RAD50):c.3153G>A (p.Leu1051=) rs35800931 0.00325
NM_032043.3(BRIP1):c.577G>A (p.Val193Ile) rs4988346 0.00305
NM_005732.4(RAD50):c.280A>C (p.Ile94Leu) rs28903085 0.00300
NM_000051.4(ATM):c.3993+5G>T rs3092842 0.00287
NM_000545.8(HNF1A):c.276C>T (p.Leu92=) rs34056805 0.00269
NM_000051.4(ATM):c.7630-17T>C rs116047570 0.00268
NM_000245.4(MET):c.3522T>C (p.His1174=) rs146651797 0.00243
NM_177438.3(DICER1):c.1377-4T>G rs192490028 0.00240
NM_020975.6(RET):c.1336G>C (p.Gly446Arg) rs115423919 0.00238
NM_000465.4(BARD1):c.620A>G (p.Lys207Arg) rs34969857 0.00218
NM_001166108.2(PALLD):c.2442A>G (p.Thr814=) rs113676921 0.00218
NM_005732.4(RAD50):c.2670G>A (p.Gln890=) rs112241748 0.00216
NM_000051.4(ATM):c.370A>G (p.Ile124Val) rs148590073 0.00215
NM_000545.8(HNF1A):c.252C>T (p.Pro84=) rs78772552 0.00215
NM_032043.3(BRIP1):c.584T>C (p.Leu195Pro) rs4988347 0.00197
NM_032043.3(BRIP1):c.2937A>G (p.Lys979=) rs75091137 0.00194
NM_007194.4(CHEK2):c.1407G>A (p.Val469=) rs17881378 0.00190
NM_000465.4(BARD1):c.33G>T (p.Gln11His) rs143914387 0.00176
NM_177438.3(DICER1):c.3972G>A (p.Lys1324=) rs45562437 0.00174
NM_000051.4(ATM):c.609C>T (p.Asp203=) rs144709948 0.00166
NM_177438.3(DICER1):c.20A>G (p.Gln7Arg) rs117358479 0.00165
NM_005732.4(RAD50):c.2091C>T (p.Val697=) rs61747588 0.00156
NM_005732.4(RAD50):c.3165-4A>T rs104895050 0.00133
NM_020975.6(RET):c.1197G>A (p.Pro399=) rs148371113 0.00108
NM_001166108.2(PALLD):c.3256C>T (p.Leu1086=) rs59633770 0.00098
NM_000051.4(ATM):c.3517T>C (p.Leu1173=) rs141460670 0.00079
NM_020975.6(RET):c.1119G>A (p.Ala373=) rs113931414 0.00079
NM_032043.3(BRIP1):c.918+15T>A rs117820198 0.00078
NM_000051.4(ATM):c.3150T>C (p.Leu1050=) rs3092859 0.00076
NM_177438.3(DICER1):c.2614G>A (p.Ala872Thr) rs149242330 0.00074
NM_000051.4(ATM):c.1744T>C (p.Phe582Leu) rs2235006 0.00071
NM_005732.4(RAD50):c.885+11G>A rs117081789 0.00071
NM_001166108.2(PALLD):c.2199+8G>A rs200060953 0.00070
NM_177438.3(DICER1):c.924C>T (p.Ala308=) rs142397473 0.00070
NM_020975.6(RET):c.1465G>A (p.Asp489Asn) rs9282834 0.00068
NM_000545.8(HNF1A):c.210C>T (p.Ser70=) rs146686581 0.00061
NM_000051.4(ATM):c.1986T>C (p.Phe662=) rs1800055 0.00046
NM_000051.4(ATM):c.3342G>A (p.Lys1114=) rs138393322 0.00044
NM_020975.6(RET):c.2037C>T (p.Pro679=) rs55862116 0.00039
NM_000051.4(ATM):c.6808-22C>A rs3218700 0.00036
NM_000051.4(ATM):c.4949A>G (p.Asn1650Ser) rs55870064 0.00030
NM_000051.4(ATM):c.7044G>A (p.Thr2348=) rs140104789 0.00030
NM_000245.4(MET):c.1191C>T (p.Cys397=) rs35763409 0.00028
NM_000051.4(ATM):c.3402+17T>C rs3092825 0.00020
NM_000458.4(HNF1B):c.73G>T (p.Val25Leu) rs139107479 0.00015
NM_001166108.2(PALLD):c.1965-12530C>T rs753092219 0.00009
NM_007194.4(CHEK2):c.847-17T>C rs199780411 0.00006
NM_000051.4(ATM):c.4146A>G (p.Pro1382=) rs147738621 0.00004
NM_000465.4(BARD1):c.1473G>A (p.Gly491=) rs151080730 0.00004
NM_001166108.2(PALLD):c.1965-12565G>A rs368350042 0.00004
NM_020975.6(RET):c.1118C>T (p.Ala373Val) rs546866208 0.00004
NM_020975.6(RET):c.2976G>A (p.Pro992=) rs528823385 0.00004
NM_000245.4(MET):c.690G>A (p.Thr230=) rs200138253 0.00003
NM_020975.6(RET):c.2393-9C>T rs567543719 0.00002
NM_032043.3(BRIP1):c.1433A>G (p.His478Arg) rs45501097 0.00002
NM_177438.3(DICER1):c.4407T>C (p.Leu1469=) rs540502223 0.00002
NM_000051.4(ATM):c.8730C>G (p.Leu2910=) rs551041839 0.00001
NM_000545.8(HNF1A):c.-4A>G rs561269721 0.00001
NM_000051.4(ATM):c.1380G>C (p.Thr460=) rs145333518
NM_000051.4(ATM):c.2442C>A (p.Asp814Glu) rs3218695
NM_000051.4(ATM):c.2805G>C (p.Thr935=) rs55934812
NM_000051.4(ATM):c.3154-4G>A rs199543313
NM_000465.3(BARD1):c.1518_1519invTG (p.Val507Met)
NM_000465.4(BARD1):c.1075_1095del (p.Leu359_Pro365del) rs28997575
NM_020975.6(RET):c.2393-14C>T rs144269978
NM_032043.3(BRIP1):c.2400C>T (p.Tyr800=) rs574552037

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