ClinVar Miner

List of variants reported as benign for central nervous system neoplasm by Labcorp Genetics (formerly Invitae), Labcorp

Included ClinVar conditions (115):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 216
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_003000.3(SDHB):c.18C>A (p.Ala6=) rs2746462 0.95374
NM_004168.4(SDHA):c.891T>C (p.Pro297=) rs1126417 0.74998
NM_016169.4(SUFU):c.1365+19T>C rs12414407 0.68248
NM_003000.3(SDHB):c.642+325C>T rs2235930 0.51227
NM_016169.4(SUFU):c.182+16C>T rs2274351 0.46492
NM_003072.5(SMARCA4):c.1524T>C (p.His508=) rs7935 0.32239
NM_003072.5(SMARCA4):c.4887T>C (p.Asp1629=) rs7275 0.28266
NM_004168.4(SDHA):c.1932G>A (p.Val644=) rs6961 0.26598
NM_004168.4(SDHA):c.1038C>G (p.Ser346=) rs1041949 0.26134
NM_004168.4(SDHA):c.619A>C (p.Arg207=) rs6555055 0.25190
NM_004168.4(SDHA):c.1752A>G (p.Ala584=) rs13070 0.25187
NM_004168.4(SDHA):c.684T>C (p.Asn228=) rs2115272 0.25174
NM_004168.4(SDHA):c.309A>G (p.Ala103=) rs1139424 0.25161
NM_004168.4(SDHA):c.1680G>A (p.Thr560=) rs1139449 0.25156
NM_004168.4(SDHA):c.1886A>T (p.Tyr629Phe) rs6960 0.24550
NM_004168.4(SDHA):c.1969G>A (p.Val657Ile) rs6962 0.18133
NM_003072.5(SMARCA4):c.4425-5330G>T rs1122608 0.17470
NM_016169.4(SUFU):c.1299T>C (p.Ile433=) rs17114803 0.14628
NM_004168.4(SDHA):c.1170C>T (p.Phe390=) rs35277230 0.10356
NM_003072.5(SMARCA4):c.1944-19G>T rs74942410 0.06144
NM_003072.5(SMARCA4):c.4053C>T (p.Asp1351=) rs28997582 0.04598
NM_003072.5(SMARCA4):c.4584C>T (p.Asp1528=) rs9105 0.04127
NM_003072.5(SMARCA4):c.356-14A>G rs111447132 0.03865
NM_003072.5(SMARCA4):c.1413G>A (p.Lys471=) rs17001073 0.03431
NM_003072.5(SMARCA4):c.2123+12C>T rs17001090 0.03024
NM_003072.5(SMARCA4):c.1509A>G (p.Ala503=) rs17001075 0.03015
NM_004168.4(SDHA):c.113A>T (p.Asp38Val) rs34635677 0.02888
NM_003001.5(SDHC):c.-38G>A rs112556972 0.01611
NM_004168.4(SDHA):c.1664-8G>A rs199790689 0.01533
NM_004168.4(SDHA):c.1305G>T (p.Leu435=) rs35964044 0.01515
NM_003072.5(SMARCA4):c.915G>A (p.Pro305=) rs149573400 0.01397
NM_004168.4(SDHA):c.1776T>C (p.His592=) rs1126538 0.01372
NM_003000.3(SDHB):c.8C>G (p.Ala3Gly) rs11203289 0.01309
NM_003072.5(SMARCA4):c.1419+8C>T rs115492175 0.01292
NM_004168.4(SDHA):c.822C>T (p.Gly274=) rs34771391 0.01114
NM_003072.5(SMARCA4):c.1114T>C (p.Tyr372His) rs140192268 0.01034
NM_003072.5(SMARCA4):c.4635+12G>A rs34930626 0.01001
NM_003000.3(SDHB):c.487T>C (p.Ser163Pro) rs33927012 0.00921
NM_004168.4(SDHA):c.549C>T (p.Gly183=) rs61733344 0.00892
NM_003072.5(SMARCA4):c.930C>A (p.Arg310=) rs146141457 0.00837
NM_003072.5(SMARCA4):c.4768+15G>C rs113131294 0.00813
NM_003001.5(SDHC):c.*84G>C rs201210474 0.00703
NM_003072.5(SMARCA4):c.4768+16G>T rs151265814 0.00684
NM_016169.4(SUFU):c.1018G>T (p.Ala340Ser) rs34135067 0.00646
NM_004168.4(SDHA):c.17G>A (p.Gly6Asp) rs187964306 0.00596
NM_003072.5(SMARCA4):c.2002-19T>C rs111899994 0.00578
NM_003072.5(SMARCA4):c.222+14T>C rs112825147 0.00548
NM_003072.5(SMARCA4):c.1419+7T>C rs112977340 0.00546
NM_003072.5(SMARCA4):c.2388C>T (p.Leu796=) rs28997580 0.00508
NM_016169.4(SUFU):c.1291T>C (p.Leu431=) rs141950577 0.00487
NM_003072.5(SMARCA4):c.4272G>A (p.Pro1424=) rs114882905 0.00462
NM_003000.3(SDHB):c.24C>T (p.Ser8=) rs148738139 0.00461
NM_003001.5(SDHC):c.354T>C (p.Phe118=) rs61733156 0.00454
NM_003072.5(SMARCA4):c.4494C>T (p.Tyr1498=) rs139505007 0.00434
NM_004168.4(SDHA):c.969C>T (p.Gly323=) rs142849100 0.00430
NM_016169.4(SUFU):c.210T>C (p.Tyr70=) rs35166585 0.00430
NM_016169.4(SUFU):c.12G>A (p.Leu4=) rs189234140 0.00425
NM_003072.5(SMARCA4):c.3547-11T>C rs190104006 0.00408
NM_003079.5(SMARCE1):c.1231G>T (p.Glu411Ter) rs62622817 0.00398
NM_003072.5(SMARCA4):c.1119-12C>T rs113870824 0.00387
NM_004168.4(SDHA):c.456+20G>C rs193283468 0.00385
NM_003072.5(SMARCA4):c.2001+8T>G rs112549813 0.00384
NM_003072.5(SMARCA4):c.222+18C>T rs180832203 0.00381
NM_003072.5(SMARCA4):c.1140C>T (p.His380=) rs114594206 0.00372
NM_003072.5(SMARCA4):c.1740A>G (p.Lys580=) rs114391904 0.00291
NM_003072.5(SMARCA4):c.589C>T (p.Pro197Ser) rs200664441 0.00291
NM_004168.4(SDHA):c.146A>G (p.Asp49Gly) rs80207011 0.00261
NM_004168.4(SDHA):c.1413C>T (p.Ile471=) rs34779890 0.00259
NM_004168.4(SDHA):c.1523C>T (p.Thr508Ile) rs151266052 0.00245
NM_003072.5(SMARCA4):c.2275-3C>A rs117611401 0.00243
NM_003072.5(SMARCA4):c.2757C>T (p.Pro919=) rs113955216 0.00241
NM_004168.4(SDHA):c.313-19G>T rs185555941 0.00235
NM_003072.5(SMARCA4):c.981A>C (p.Pro327=) rs547268941 0.00233
NM_003079.5(SMARCE1):c.369+12G>T rs58739414 0.00232
NM_003000.3(SDHB):c.170A>G (p.His57Arg) rs35962811 0.00231
NM_004168.4(SDHA):c.1623G>A (p.Lys541=) rs35502109 0.00206
NM_003072.5(SMARCA4):c.4768+10G>A rs201665695 0.00200
NM_004168.4(SDHA):c.1551+16C>T rs184954254 0.00198
NM_003072.5(SMARCA4):c.4227A>G (p.Ser1409=) rs61761958 0.00191
NM_003000.3(SDHB):c.32G>A (p.Arg11His) rs111430410 0.00185
NM_004168.4(SDHA):c.1911C>T (p.Val637=) rs11557098 0.00180
NM_003000.3(SDHB):c.423+20T>A rs190139590 0.00179
NM_003072.5(SMARCA4):c.3045C>T (p.Gly1015=) rs56101423 0.00163
NM_003072.5(SMARCA4):c.3663G>A (p.Lys1221=) rs61761957 0.00158
NM_003000.3(SDHB):c.300T>C (p.Ser100=) rs11541235 0.00157
NM_003072.5(SMARCA4):c.258C>T (p.Asp86=) rs115992445 0.00153
NM_016169.4(SUFU):c.528C>T (p.His176=) rs150569584 0.00148
NM_016169.4(SUFU):c.910+14C>T rs202247757 0.00139
NM_003072.5(SMARCA4):c.859+7T>A rs141461778 0.00138
NM_003072.5(SMARCA4):c.1419+9C>T rs374635008 0.00128
NM_004168.4(SDHA):c.1368G>A (p.Ser456=) rs149875171 0.00117
NM_003072.5(SMARCA4):c.76G>A (p.Ala26Thr) rs145867502 0.00116
NM_016169.4(SUFU):c.600C>T (p.Ile200=) rs149513330 0.00116
NM_003072.5(SMARCA4):c.4171-1737T>A rs199543083 0.00107
NM_003072.5(SMARCA4):c.3891C>G (p.Pro1297=) rs149562732 0.00103
NM_004168.4(SDHA):c.1396G>A (p.Ala466Thr) rs111387770 0.00097
NM_003072.5(SMARCA4):c.3927C>T (p.His1309=) rs148495641 0.00079
NM_004168.4(SDHA):c.1260+13G>T rs185239026 0.00076
NM_004168.4(SDHA):c.1002G>A (p.Ala334=) rs144252500 0.00075
NM_003072.5(SMARCA4):c.223-5C>T rs376775933 0.00066
NM_003079.5(SMARCE1):c.1101G>A (p.Lys367=) rs148666451 0.00066
NM_004168.4(SDHA):c.550G>A (p.Gly184Arg) rs148246073 0.00056
NM_003000.3(SDHB):c.21C>T (p.Leu7=) rs147815442 0.00054
NM_003072.5(SMARCA4):c.2967C>T (p.Pro989=) rs149874634 0.00051
NM_004168.4(SDHA):c.723C>T (p.Asp241=) rs146653693 0.00049
NM_003079.5(SMARCE1):c.1028-18A>G rs202149619 0.00048
NM_003072.5(SMARCA4):c.2817C>T (p.Phe939=) rs147791182 0.00047
NM_003072.5(SMARCA4):c.4171-13A>G rs201298366 0.00047
NM_004168.4(SDHA):c.163T>C (p.Tyr55His) rs142926807 0.00046
NM_003072.5(SMARCA4):c.2850C>T (p.Thr950=) rs141259126 0.00045
NM_003072.5(SMARCA4):c.708T>C (p.Pro236=) rs62639303 0.00044
NM_003000.3(SDHB):c.158G>A (p.Gly53Glu) rs34916635 0.00041
NM_003079.5(SMARCE1):c.351C>T (p.Asn117=) rs149613910 0.00041
NM_003072.5(SMARCA4):c.3738C>T (p.Phe1246=) rs139943231 0.00039
NM_003072.5(SMARCA4):c.1791T>G (p.Pro597=) rs141806282 0.00038
NM_003072.5(SMARCA4):c.2973+14G>A rs372877301 0.00034
NM_003072.5(SMARCA4):c.1593+14T>A rs201395711 0.00033
NM_003072.5(SMARCA4):c.355+11G>A rs368761916 0.00032
NM_003072.5(SMARCA4):c.4179G>A (p.Glu1393=) rs201879930 0.00030
NM_003072.5(SMARCA4):c.747C>T (p.Tyr249=) rs756224211 0.00021
NM_016169.4(SUFU):c.6G>T (p.Ala2=) rs746555296 0.00021
NM_003072.5(SMARCA4):c.4170+16G>A rs191812860 0.00019
NM_004168.4(SDHA):c.1569T>C (p.Ala523=) rs150192376 0.00019
NM_003072.5(SMARCA4):c.4171-1858T>A rs201309716 0.00018
NM_016169.4(SUFU):c.1308C>T (p.Thr436=) rs142029957 0.00018
NM_003072.5(SMARCA4):c.1099C>T (p.Leu367=) rs372379166 0.00017
NM_003072.5(SMARCA4):c.2064G>A (p.Lys688=) rs368941893 0.00017
NM_003072.5(SMARCA4):c.2860-14T>C rs191509662 0.00016
NM_003072.5(SMARCA4):c.441C>T (p.Ser147=) rs201372858 0.00016
NM_003079.5(SMARCE1):c.894A>G (p.Lys298=) rs759780963 0.00016
NM_003072.5(SMARCA4):c.2739G>A (p.Pro913=) rs183695281 0.00014
NM_003072.5(SMARCA4):c.3952-20G>A rs369464237 0.00014
NM_003072.5(SMARCA4):c.2409T>C (p.Asn803=) rs199634608 0.00012
NM_003079.5(SMARCE1):c.369+10G>C rs199790447 0.00012
NM_003072.5(SMARCA4):c.1557C>T (p.Asn519=) rs2288845 0.00011
NM_016169.4(SUFU):c.1245C>T (p.Gly415=) rs144158469 0.00011
NM_003072.5(SMARCA4):c.2460C>T (p.Tyr820=) rs372410282 0.00010
NM_003072.5(SMARCA4):c.3168+9G>A rs369201773 0.00010
NM_003072.5(SMARCA4):c.4011C>T (p.Leu1337=) rs377720149 0.00010
NM_003072.5(SMARCA4):c.4293C>T (p.Arg1431=) rs149670457 0.00009
NM_004168.4(SDHA):c.1089C>T (p.His363=) rs368488126 0.00008
NM_003001.5(SDHC):c.179+10G>A rs532455044 0.00006
NM_003072.5(SMARCA4):c.3383-5G>A rs762528243 0.00006
NM_003072.5(SMARCA4):c.1803G>A (p.Pro601=) rs751166438 0.00005
NM_003079.5(SMARCE1):c.954C>T (p.Ile318=) rs376628666 0.00005
NM_003079.5(SMARCE1):c.963G>A (p.Glu321=) rs753203502 0.00005
NM_016169.4(SUFU):c.183-4G>A rs766044613 0.00005
NM_003072.5(SMARCA4):c.1209G>A (p.Glu403=) rs200159174 0.00004
NM_003072.5(SMARCA4):c.2199C>T (p.Ala733=) rs538629432 0.00004
NM_003072.5(SMARCA4):c.3765G>A (p.Glu1255=) rs183060137 0.00004
NM_001387283.1(SMARCA4):c.4187A>T (p.Asp1396Val) rs186823009 0.00003
NM_003072.5(SMARCA4):c.222+19G>A rs759047953 0.00003
NM_003072.5(SMARCA4):c.2974-4G>A rs766593089 0.00003
NM_003072.5(SMARCA4):c.3066C>T (p.Ser1022=) rs149111403 0.00003
NM_003000.3(SDHB):c.765+13G>A rs115561881 0.00002
NM_003072.5(SMARCA4):c.2123+13G>A rs373148510 0.00002
NM_003072.5(SMARCA4):c.2617-4G>A rs201020451 0.00002
NM_003072.5(SMARCA4):c.4872G>A (p.Pro1624=) rs182644267 0.00002
NM_004168.4(SDHA):c.1394G>A (p.Arg465Gln) rs138277996 0.00002
NM_016169.4(SUFU):c.911-16A>C rs777832144 0.00002
NM_003072.5(SMARCA4):c.2347C>T (p.Leu783=) rs762449855 0.00001
NM_003072.5(SMARCA4):c.2637T>C (p.Ile879=) rs369795542 0.00001
NM_003072.5(SMARCA4):c.4152G>A (p.Thr1384=) rs372620534 0.00001
NM_003072.5(SMARCA4):c.4251C>T (p.Ser1417=) rs377057304 0.00001
NM_003072.5(SMARCA4):c.54G>A (p.Pro18=) rs529632222 0.00001
NM_004168.4(SDHA):c.1367C>T (p.Ser456Leu) rs76896145 0.00001
NM_004168.4(SDHA):c.1371C>A (p.Leu457=) rs75091805 0.00001
NM_016169.4(SUFU):c.645C>T (p.Asn215=) rs551772204 0.00001
NM_003000.2(SDHB):c.424-16_424-14dup rs34261028
NM_003000.3(SDHB):c.424-37TTC[10] rs34261028
NM_003000.3(SDHB):c.424-37TTC[6] rs34261028
NM_003000.3(SDHB):c.424-37TTC[7] rs34261028
NM_003000.3(SDHB):c.73-29del rs745905902
NM_003000.3(SDHB):c.73-7del rs2101541662
NM_003001.3(SDHC):c.20+11_20+12dup rs35215598
NM_003001.5(SDHC):c.242-9del
NM_003072.5(SMARCA4):c.1098C>T (p.Ile366=) rs532242119
NM_003072.5(SMARCA4):c.120C>T (p.His40=) rs375884151
NM_003072.5(SMARCA4):c.1594-13del
NM_003072.5(SMARCA4):c.1594-13dup
NM_003072.5(SMARCA4):c.1594-18dup rs778456116
NM_003072.5(SMARCA4):c.1813-4dup rs1864896196
NM_003072.5(SMARCA4):c.1944-12C>T rs149763341
NM_003072.5(SMARCA4):c.1944-5del
NM_003072.5(SMARCA4):c.1944-5dup rs1555768671
NM_003072.5(SMARCA4):c.223-4G>A rs763383326
NM_003072.5(SMARCA4):c.2275-17C>G rs201752124
NM_003072.5(SMARCA4):c.2580C>T (p.Tyr860=) rs776649185
NM_003072.5(SMARCA4):c.2763C>T (p.Leu921=) rs574844383
NM_003072.5(SMARCA4):c.2860-8del rs2146451474
NM_003072.5(SMARCA4):c.2973+19dup
NM_003072.5(SMARCA4):c.3547-3dup rs2075055829
NM_003072.5(SMARCA4):c.4170+17C>T rs145829956
NM_003072.5(SMARCA4):c.4171-1861del rs551217010
NM_003072.5(SMARCA4):c.4458C>T (p.Ile1486=) rs550796495
NM_003072.5(SMARCA4):c.459G>A (p.Pro153=) rs372931195
NM_003072.5(SMARCA4):c.4636-17del
NM_003072.5(SMARCA4):c.4768+16del rs770591183
NM_003072.5(SMARCA4):c.4768+16dup rs770591183
NM_003072.5(SMARCA4):c.4773G>A (p.Arg1591=) rs568650875
NM_003072.5(SMARCA4):c.4911+16del
NM_003072.5(SMARCA4):c.4911+16dup rs769996403
NM_003072.5(SMARCA4):c.942G>A (p.Ala314=) rs567283924
NM_003079.5(SMARCE1):c.238-4dup
NM_003079.5(SMARCE1):c.541+14del rs766497450
NM_003079.5(SMARCE1):c.817-15dup rs747318581
NM_003079.5(SMARCE1):c.817-9del
NM_004168.4(SDHA):c.1260+23dup
NM_004168.4(SDHA):c.1432+20G>C rs200127852
NM_004168.4(SDHA):c.1433-3del rs2126602411
NM_004168.4(SDHA):c.1433-8del
NM_004168.4(SDHA):c.1433-8dup rs769594966
NM_004168.4(SDHA):c.150+17dup rs1734837730
NM_004168.4(SDHA):c.1664-11del rs1561010692
NM_004168.4(SDHA):c.457-12del rs2126549133
NM_004168.4(SDHA):c.896-5del rs751123858

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