ClinVar Miner

List of variants studied for cerebral palsy by Neurogenetics Research Program, University of Adelaide

Included ClinVar conditions (18):
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Minimum conflict level:
ClinVar version:
Total variants: 43
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HGVS dbSNP gnomAD frequency
NM_000506.5(F2):c.*97G>A rs1799963 0.00979
NM_000083.3(CLCN1):c.2680C>T (p.Arg894Ter) rs55960271 0.00561
NM_014946.4(SPAST):c.131C>T (p.Ser44Leu) rs121908515 0.00521
NM_000506.3(F2):c.598G>A (p.Glu200Lys) rs62623459 0.00138
NM_004366.6(CLCN2):c.1730G>A (p.Arg577Gln) rs137852682 0.00047
NM_014946.4(SPAST):c.1625A>G (p.Asp542Gly) rs142053576 0.00024
NM_000312.4(PROC):c.226G>A (p.Val76Met) rs121918149 0.00003
NM_000719.7(CACNA1C):c.3568G>T (p.Val1190Leu) rs1048241141 0.00001
GRCh37/hg19 15q11.2-12(chr15:22722801-26749200)
GRCh37/hg19 1q21.1(chr1:145382601-145616000)
GRCh37/hg19 22q11.21(chr22:18873001-21469900)
GRCh37/hg19 9q33.1(chr9:119311659-119462832)
Multiple alleles
NC_012920.1(MT-TL1):m.3243A>G rs199474657
NM_000132.4(F8):c.5146C>A (p.His1716Asn) rs2073172888
NM_000153.4:c.[1592G>A];[334A>G]
NM_000382.3(ALDH3A2):c.941_943delinsGGGCTAAAAGTACTGTTGGGG (p.Ala314_Pro315delinsGlyAlaLysSerThrValGlyAla) rs730880264
NM_000834.5(GRIN2B):c.1739T>A (p.Phe580Tyr) rs199801114
NM_001042724.2(NECTIN2):c.127C>T (p.Arg43Ter) rs1365743374
NM_001127222.2(CACNA1A):c.7249G>T (p.Glu2417Ter) rs1008881855
NM_001136271.3(NKX2-6):c.455dup (p.Gln153fs) rs757292066
NM_001211.6(BUB1B):c.1526C>A (p.Ser509Ter) rs2140900967
NM_001267550.2(TTN):c.50473C>T (p.Gln16825Ter) rs2154199961
NM_001378183.1(PIEZO2):c.1444del (p.Arg482fs) rs2144239123
NM_001388492.1(HTT):c.7725G>A (p.Gln2575=) rs1720799396
NM_001845.6(COL4A1):c.1258G>A (p.Gly420Arg) rs2139187274
NM_001845.6(COL4A1):c.4114G>C (p.Gly1372Arg) rs2139149224
NM_001846.4(COL4A2):c.3625G>A (p.Gly1209Arg) rs2139538791
NM_001846.4(COL4A2):c.4049G>A (p.Gly1350Asp) rs2139552522
NM_001846.4(COL4A2):c.957+2T>C rs1013146465
NM_002074.5(GNB1):c.239T>C (p.Ile80Thr) rs752746786
NM_002609.4(PDGFRB):c.2083C>T (p.Arg695Cys) rs138008832
NM_005228.5(EGFR):c.925C>T (p.Arg309Ter) rs1444692842
NM_006009.4(TUBA1A):c.50G>A (p.Gly17Asp) rs2121248568
NM_006087.4(TUBB4A):c.1228G>A (p.Glu410Lys) rs587777428
NM_014874.4(MFN2):c.2220G>A (p.Trp740Ter) rs1060501925
NM_014946.4(SPAST):c.1099-4371_1245+1010del
NM_015046.7(SETX):c.5821_5830del (p.Ala1941fs) rs797045067
NM_017415.3(KLHL3):c.1692G>A (p.Trp564Ter) rs2149876234
NM_020738.4(KIDINS220):c.4497del (p.Arg1499fs) rs2147944830
NM_020754.4(ARHGAP31):c.1700del (p.Pro567fs) rs2107644554
NM_182914.3(SYNE2):c.16153C>T (p.Gln5385Ter) rs2153715439
Single allele

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