ClinVar Miner

List of variants studied for esophageal atresia/tracheoesophageal fistula

Included ClinVar conditions (8):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 68
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_024675.4(PALB2):c.11C>T (p.Pro4Leu) rs45619737 0.00010
NM_032043.3(BRIP1):c.2392C>T (p.Arg798Ter) rs137852986 0.00010
NM_003917.5(AP1G2):c.464G>A (p.Arg155His) rs200202756 0.00007
NM_000059.4(BRCA2):c.7051G>A (p.Ala2351Thr) rs80358930 0.00006
NM_001377229.1(DISP1):c.4054C>T (p.Pro1352Ser) rs952023183 0.00004
NM_144643.4(SCLT1):c.638C>T (p.Thr213Ile) rs760824351 0.00003
NM_001408.3(CELSR2):c.2858A>G (p.Asn953Ser) rs1223692503 0.00002
NM_005401.5(PTPN14):c.1919G>A (p.Arg640His) rs774735121 0.00002
NM_015395.3(TECPR1):c.2617G>A (p.Asp873Asn) rs767020833 0.00002
NM_144643.4(SCLT1):c.1421T>C (p.Ile474Thr) rs747582277 0.00002
NM_000059.4(BRCA2):c.5857G>T (p.Glu1953Ter) rs80358814 0.00001
NM_000059.4(BRCA2):c.9117G>A (p.Pro3039=) rs28897756 0.00001
NM_005585.5(SMAD6):c.1093G>A (p.Gly365Ser) rs1176080464 0.00001
NM_012414.4(RAB3GAP2):c.1379G>A (p.Arg460Gln) rs757551395 0.00001
NM_014991.6(WDFY3):c.3737A>G (p.Tyr1246Cys) rs751185435 0.00001
NM_152698.3(AMER3):c.2236C>T (p.Arg746Ter) rs768719549 0.00001
NM_198317.3(KLHL17):c.1682C>A (p.Ala561Glu) rs756054473 0.00001
46;XY;t(15;17)(q24;q21.3)dn
46;XY;t(6;8)(q13;q13)dn
GRCh37/hg19 15q26.3(chr15:100923767-101626187)
NM_000059.4(BRCA2):c.145G>T (p.Glu49Ter) rs80358435
NM_000059.4(BRCA2):c.5682C>G (p.Tyr1894Ter) rs41293497
NM_000059.4(BRCA2):c.7625C>T (p.Thr2542Met) rs80358989
NM_000208.4(INSR):c.3364G>A (p.Ala1122Thr) rs1250061465
NM_000719.7(CACNA1C):c.5761C>T (p.Pro1921Ser) rs1603462691
NM_000819.5(GART):c.1907T>G (p.Leu636Arg) rs2084898135
NM_000938.3(POLR2B):c.2123C>T (p.Ala708Val) rs1723396043
NM_001007237.3(IGSF3):c.1841G>T (p.Arg614Leu) rs190300523
NM_001034853.2(RPGR):c.780G>T (p.Glu260Asp) rs1328506002
NM_001083962.2(TCF4):c.337G>C (p.Gly113Arg) rs1556050492
NM_001104631.2(PDE4D):c.1339T>C (p.Tyr447His) rs1580132131
NM_001130021.3(ATP6V0A1):c.1340G>A (p.Arg447Gln) rs1204448380
NM_001256.6(CDC27):c.4A>G (p.Thr2Ala) rs62077280
NM_001288718.2(STAT5A):c.1279G>A (p.Ala427Thr) rs1598364148
NM_001288772.2(PIK3C2G):c.761+2T>C rs1949470660
NM_001347217.2(WDR13):c.911C>T (p.Thr304Ile) rs1602147382
NM_001354761.2(ADD1):c.1A>G (p.Met1Val) rs1731205978
NM_001374736.1(DST):c.11993C>G (p.Ser3998Ter) rs1586153937
NM_001382508.1(DROSHA):c.323G>A (p.Arg108Lys) rs1580396270
NM_001387011.1(AMBRA1):c.431C>T (p.Ala144Val) rs1565279367
NM_001389.5(DSCAM):c.4979T>A (p.Ile1660Asn) rs1601280227
NM_001395460.1(TENM2):c.4165C>A (p.Leu1389Met) rs1581659572
NM_001520.4(GTF3C1):c.6040C>A (p.Pro2014Thr) rs750159671
NM_002163.4(IRF8):c.814G>A (p.Gly272Arg) rs1905412024
NM_002211.4(ITGB1):c.2252G>A (p.Trp751Ter) rs1593853217
NM_002235.5(KCNA6):c.233A>G (p.Asp78Gly) rs1591588696
NM_002249.6(KCNN3):c.200AGC[16] (p.Gln79_Gln80dup) rs3831942
NM_003024.3(ITSN1):c.4381C>T (p.Arg1461Cys) rs1985063411
NM_004247.4(EFTUD2):c.2419del (p.Gln807fs) rs2050493812
NM_005883.3(APC2):c.665T>C (p.Ile222Thr) rs2083820577
NM_006622.4(PLK2):c.1049C>T (p.Thr350Ile) rs1579964675
NM_006747.4(SIPA1):c.367A>G (p.Ser123Gly) rs1590917647
NM_012216.4(MID2):c.1757T>C (p.Ile586Thr) rs1602513371
NM_014905.5(GLS):c.1940C>T (p.Thr647Ile) rs1691037804
NM_017442.4(TLR9):c.548C>G (p.Pro183Arg) rs780099835
NM_017617.5(NOTCH1):c.6032T>C (p.Leu2011Pro) rs1589054568
NM_017633.3(TENT5A):c.26C>G (p.Ala9Gly) rs1581992148
NM_017633.3(TENT5A):c.64C>G (p.Pro22Ala) rs1581992092
NM_017633.3(TENT5A):c.65C>G (p.Pro22Arg) rs1311215973
NM_032420.5(PCDH1):c.353A>G (p.Glu118Gly) rs1753000062
NM_152296.5(ATP1A3):c.1978C>A (p.Leu660Ile) rs1599713761
NM_153006.3(NAGS):c.1378C>G (p.Leu460Val) rs1272126077
NM_198253.3(TERT):c.1185G>T (p.Glu395Asp) rs1579596881
NM_198390.3(CMIP):c.1478C>G (p.Thr493Ser) rs1597258512
NM_198904.4(GABRG2):c.155A>G (p.Asn52Ser) rs1581342223
NM_203403.2(LURAP1L):c.346C>T (p.Arg116Cys) rs754557712
NM_207322.3(C2CD4A):c.284A>C (p.His95Pro) rs1596557030
Single allele

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.