ClinVar Miner

List of variants studied for Joubert syndrome 1 by UW Hindbrain Malformation Research Program, University of Washington

Included ClinVar conditions (11):
Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 57
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HGVS dbSNP gnomAD frequency
NM_006346.4(PIBF1):c.1214G>A (p.Arg405Gln) rs17089782 0.00771
NM_017777.4(MKS1):c.417G>A (p.Glu139=) rs386834048 0.00014
NM_001258244.2(TMEM218):c.238C>T (p.Arg80Cys) rs141744337 0.00009
NM_019892.6(INPP5E):c.1754G>A (p.Arg585His) rs752300607 0.00005
NM_001308120.2(TOGARAM1):c.1124T>C (p.Leu375Pro) rs150433582 0.00004
NM_001286577.2(C2CD3):c.5267G>A (p.Gly1756Glu) rs150291837 0.00003
NM_019892.6(INPP5E):c.1162G>T (p.Val388Leu) rs863225201 0.00003
NM_019892.6(INPP5E):c.1304G>A (p.Arg435Gln) rs121918129 0.00003
NM_019892.6(INPP5E):c.1468G>T (p.Asp490Tyr) rs757222534 0.00003
NM_019892.6(INPP5E):c.1577C>T (p.Pro526Leu) rs746867724 0.00003
NM_001258244.2(TMEM218):c.239G>A (p.Arg80His) rs575689990 0.00002
NM_001308120.2(TOGARAM1):c.1112C>A (p.Ala371Asp) rs370676288 0.00002
NM_015681.6(B9D1):c.95A>G (p.Tyr32Cys) rs771170000 0.00002
NM_017777.4(MKS1):c.493C>T (p.Arg165Cys) rs779953982 0.00002
NM_019892.6(INPP5E):c.1064C>T (p.Thr355Met) rs863225198 0.00002
NM_019892.6(INPP5E):c.1760del (p.Val587fs) rs775518991 0.00002
NM_019892.6(INPP5E):c.944C>T (p.Pro315Leu) rs754637179 0.00002
NM_001286577.2(C2CD3):c.184C>T (p.Arg62Ter) rs587777653 0.00001
NM_015662.3(IFT172):c.4630C>T (p.Arg1544Cys) rs587777079 0.00001
NM_017777.4(MKS1):c.1208C>T (p.Ser403Leu) rs773684291 0.00001
NM_019892.6(INPP5E):c.1021G>A (p.Gly341Ser) rs780882740 0.00001
NM_019892.6(INPP5E):c.907G>A (p.Val303Met) rs746212325 0.00001
NM_024809.5(TCTN2):c.1117G>A (p.Gly373Arg) rs187433682 0.00001
NM_024809.5(TCTN2):c.1626del (p.Asp543fs) rs863225220 0.00001
NM_024809.5(TCTN2):c.1751T>A (p.Ile584Lys) rs201010803 0.00001
NM_030578.4(B9D2):c.107T>C (p.Leu36Pro) rs757863670 0.00001
NM_001258244.2(TMEM218):c.26G>T (p.Gly9Val) rs1950967763
NM_001286577.2(C2CD3):c.4951+1G>T rs863225151
NM_001308120.2(TOGARAM1):c.1084C>T (p.Gln362Ter) rs1885329722
NM_001308120.2(TOGARAM1):c.1102C>T (p.Arg368Trp) rs368448387
NM_001308120.2(TOGARAM1):c.3248C>A (p.Ser1083Ter) rs1463041654
NM_001308120.2(TOGARAM1):c.3931C>T (p.Arg1311Cys) rs759684383
NM_001308120.2(TOGARAM1):c.5182C>T (p.Arg1728Ter) rs745704336
NM_001308120.2:c.2339_3238del
NM_006346.4(PIBF1):c.1669del (p.Leu557fs) rs863225214
NM_015681.6(B9D1):c.285C>A (p.Phe95Leu) rs373478202
NM_015681.6(B9D1):c.466C>T (p.Arg156Trp) rs369488112
NM_017777.4(MKS1):c.1115_1117del (p.Ser372del) rs754279998
NM_017777.4(MKS1):c.1261C>T (p.Pro421Ser) rs863225210
NM_017777.4(MKS1):c.1389G>T (p.Arg463=) rs773269657
NM_017777.4(MKS1):c.1528dup (p.Arg510fs) rs863225204
NM_017777.4(MKS1):c.1589-2A>T rs863225207
NM_017777.4(MKS1):c.262-179_262-37del rs1555600644
NM_017777.4(MKS1):c.381del (p.Tyr128fs) rs863225206
NM_017777.4(MKS1):c.55G>T (p.Asp19Tyr) rs863225205
NM_017777.4(MKS1):c.767_768insC (p.Glu256fs) rs863225209
NM_017777.4(MKS1):c.950G>A (p.Gly317Glu) rs863225208
NM_019892.6(INPP5E):c.1154G>A (p.Cys385Tyr) rs863225200
NM_019892.6(INPP5E):c.1249T>C (p.Ser417Pro) rs863225202
NM_019892.6(INPP5E):c.1684A>G (p.Ser562Gly) rs863225197
NM_019892.6(INPP5E):c.1897_1898del (p.Gln633fs) rs863225199
NM_024809.5(TCTN2):c.1291G>T (p.Glu431Ter) rs863225221
NM_024809.5(TCTN2):c.613G>T (p.Gly205Cys) rs201827132
NM_024809.5(TCTN2):c.76del (p.Asp26fs) rs863225222
NM_024809.5(TCTN2):c.76dup (p.Asp26fs) rs863225222
NM_030578.4(B9D2):c.220C>T (p.Pro74Ser) rs863225150
NM_030578.4(B9D2):c.463G>A (p.Gly155Ser) rs750436680

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