List of variants in gene GLI2 reported as benign by PreventionGenetics, part of Exact Sciences

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

Total variants: 35

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HGVS	dbSNP	gnomAD frequency
NM_001374353.1(GLI2):c.1182+47T>C	rs2592590	0.88095
NM_001374353.1(GLI2):c.1060-27C>T	rs2592591	0.88085
NM_001374353.1(GLI2):c.801G>A (p.Ser267=)	rs2592595	0.82634
NM_001374353.1(GLI2):c.1632+49C>T	rs280196	0.78373
NM_001374353.1(GLI2):c.643+35T>C	rs12617878	0.77226
NM_001374353.1(GLI2):c.643+24G>A	rs12614482	0.77219
NM_001374353.1(GLI2):c.3865G>A (p.Asp1289Asn)	rs12711538	0.66550
NM_001374353.1(GLI2):c.2242+35A>G	rs2276553	0.62175
NM_001374353.1(GLI2):c.3888A>G (p.Pro1296=)	rs10167980	0.61468
NM_001374353.1(GLI2):c.3415G>T (p.Ala1139Ser)	rs3738880	0.61025
NM_001374353.1(GLI2):c.2889C>T (p.Ser963=)	rs146811565	0.04735
NM_001374353.1(GLI2):c.3831G>A (p.Thr1277=)	rs115052795	0.02871
NM_001374353.1(GLI2):c.2997C>T (p.Asp999=)	rs140479803	0.02616
NM_001374353.1(GLI2):c.1893C>T (p.Thr631=)	rs13008360	0.02306
NM_001374353.1(GLI2):c.1633-17C>T	rs78949549	0.01801
NM_001374353.1(GLI2):c.963C>G (p.Pro321=)	rs149894186	0.01440
NM_001374353.1(GLI2):c.-7G>A	rs112131051	0.00890
NM_001374353.1(GLI2):c.1818C>A (p.Gly606=)	rs61732850	0.00832
NM_001374353.1(GLI2):c.3539G>A (p.Gly1180Asp)	rs114823319	0.00522
NM_001374353.1(GLI2):c.720C>T (p.Asp240=)	rs142793481	0.00483
NM_001374353.1(GLI2):c.2211G>T (p.Arg737=)	rs142856393	0.00317
NM_001374353.1(GLI2):c.2967C>T (p.Gly989=)	rs373880077	0.00285
NM_001374353.1(GLI2):c.1751A>G (p.Asn584Ser)	rs61732851	0.00254
NM_001374353.1(GLI2):c.803C>T (p.Ala268Val)	rs146992756	0.00254
NM_001374353.1(GLI2):c.3477G>T (p.Gln1159His)	rs139686081	0.00181
NM_001374353.1(GLI2):c.1935G>A (p.Ser645=)	rs114259687	0.00177
NM_001374353.1(GLI2):c.2865T>A (p.Pro955=)	rs747247646	0.00176
NM_001374353.1(GLI2):c.291C>T (p.Asp97=)	rs199671413	0.00086
NM_001374353.1(GLI2):c.3979C>T (p.Leu1327=)	rs149290823	0.00073
NM_001374353.1(GLI2):c.1260C>T (p.Thr420=)	rs200497671	0.00010
NM_001374353.1(GLI2):c.321G>A (p.Pro107=)	rs578011257	0.00009
NM_001374353.1(GLI2):c.3409G>A (p.Val1137Ile)	rs200999705	0.00001
NM_001374353.1(GLI2):c.2136C>A (p.Phe712Leu)	rs151179617
NM_001374353.1(GLI2):c.4509T>G (p.Asp1503Glu)	rs148902971
NM_001374353.1(GLI2):c.643+16C>G	rs6718382

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