ClinVar Miner

List of variants in gene LGI1 reported by GeneDx

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Gene type:
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Total variants: 118
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HGVS dbSNP gnomAD frequency
NM_005097.4(LGI1):c.431+213C>T rs9651410 0.98335
NM_005097.4(LGI1):c.432-261C>A rs4244342 0.85547
NM_005097.4(LGI1):c.432-185A>G rs4375374 0.79513
NM_005097.4(LGI1):c.674-18T>C rs1108877 0.20888
NM_005097.4(LGI1):c.288-242A>G rs11813787 0.10356
NM_005097.4(LGI1):c.503+44G>C rs12248097 0.08143
NM_005097.4(LGI1):c.503+99T>G rs12255855 0.07631
NM_005097.4(LGI1):c.287+287A>G rs9420628 0.05107
NM_005097.4(LGI1):c.674-80G>T rs79286093 0.02838
NM_005097.4(LGI1):c.504-100C>T rs75047529 0.01633
NM_005097.4(LGI1):c.503+43A>T rs12262635 0.01043
NM_005097.4(LGI1):c.431+249G>C rs189419285 0.00648
NM_005097.4(LGI1):c.345A>G (p.Pro115=) rs151104648 0.00113
NM_005097.4(LGI1):c.504-25A>G rs200521081 0.00090
NM_005097.4(LGI1):c.1A>G (p.Met1Val) rs202204627 0.00078
NM_005097.4(LGI1):c.600C>T (p.Cys200=) rs148862146 0.00068
NM_005097.4(LGI1):c.717A>C (p.Ile239=) rs146425212 0.00039
NM_005097.4(LGI1):c.1155A>C (p.Leu385=) rs202148793 0.00026
NM_005097.4(LGI1):c.191C>T (p.Thr64Ile) rs373616721 0.00011
NM_005097.4(LGI1):c.756C>T (p.Ile252=) rs368264015 0.00009
NM_005097.4(LGI1):c.1669G>A (p.Ala557Thr) rs370955995 0.00007
NM_005097.4(LGI1):c.1220G>A (p.Arg407His) rs201376381 0.00005
NM_005097.4(LGI1):c.1578A>C (p.Thr526=) rs776735038 0.00004
NM_005097.4(LGI1):c.*4A>C rs778643441 0.00003
NM_005097.4(LGI1):c.132C>T (p.Ala44=) rs751847276 0.00003
NM_005097.4(LGI1):c.1336A>C (p.Ile446Leu) rs769204967 0.00003
NM_005097.4(LGI1):c.1471A>G (p.Ile491Val) rs756891254 0.00003
NM_005097.4(LGI1):c.344C>T (p.Pro115Leu) rs763321607 0.00003
NM_005097.4(LGI1):c.744G>A (p.Glu248=) rs199916185 0.00003
NM_005097.4(LGI1):c.1062T>G (p.Ala354=) rs768151875 0.00002
NM_005097.4(LGI1):c.1598G>A (p.Arg533His) rs543647504 0.00002
NM_005097.4(LGI1):c.673+15A>G rs761597954 0.00002
NM_005097.4(LGI1):c.-33C>T rs1444604152 0.00001
NM_005097.4(LGI1):c.1060G>T (p.Ala354Ser) rs1438643979 0.00001
NM_005097.4(LGI1):c.1064G>C (p.Gly355Ala) rs2059987872 0.00001
NM_005097.4(LGI1):c.1096G>A (p.Gly366Arg) rs1394822961 0.00001
NM_005097.4(LGI1):c.113C>G (p.Ala38Gly) rs768415373 0.00001
NM_005097.4(LGI1):c.1164C>T (p.Val388=) rs1057522503 0.00001
NM_005097.4(LGI1):c.1170A>G (p.Thr390=) rs1252407810 0.00001
NM_005097.4(LGI1):c.1210A>T (p.Ser404Cys) rs1564853070 0.00001
NM_005097.4(LGI1):c.133G>A (p.Val45Met) rs755563423 0.00001
NM_005097.4(LGI1):c.1482T>C (p.Ser494=) rs1057521026 0.00001
NM_005097.4(LGI1):c.1650T>C (p.His550=) rs563455611 0.00001
NM_005097.4(LGI1):c.269C>T (p.Thr90Met) rs796052692 0.00001
NM_005097.4(LGI1):c.360-7A>G rs770317882 0.00001
NM_005097.4(LGI1):c.406C>T (p.Arg136Trp) rs119488099 0.00001
NM_005097.4(LGI1):c.407G>A (p.Arg136Gln) rs767254591 0.00001
NM_005097.4(LGI1):c.504-20A>G rs796052691 0.00001
NM_005097.4(LGI1):c.625C>T (p.Arg209Cys) rs751825973 0.00001
NM_005097.4(LGI1):c.69A>G (p.Leu23=) rs868635600 0.00001
NM_005097.4(LGI1):c.757G>A (p.Ala253Thr) rs1440639718 0.00001
NM_005097.4(LGI1):c.79T>C (p.Ser27Pro) rs775207050 0.00001
NC_000010.11:g.93757739C>T rs182751947
NM_005097.4(LGI1):c.108del (p.Lys36fs) rs2133975489
NM_005097.4(LGI1):c.1097G>C (p.Gly366Ala) rs2059988287
NM_005097.4(LGI1):c.1106C>G (p.Ser369Cys) rs150357603
NM_005097.4(LGI1):c.1108C>T (p.His370Tyr) rs796052695
NM_005097.4(LGI1):c.1123G>A (p.Ala375Thr) rs757480776
NM_005097.4(LGI1):c.1130A>C (p.Tyr377Ser) rs2059988873
NM_005097.4(LGI1):c.1133G>A (p.Arg378Lys)
NM_005097.4(LGI1):c.1187C>T (p.Thr396Met) rs905576558
NM_005097.4(LGI1):c.1247C>A (p.Ala416Glu)
NM_005097.4(LGI1):c.1274A>C (p.Asp425Ala) rs796052696
NM_005097.4(LGI1):c.1275C>G (p.Asp425Glu)
NM_005097.4(LGI1):c.12A>C (p.Glu4Asp)
NM_005097.4(LGI1):c.1300G>A (p.Ala434Thr) rs758287710
NM_005097.4(LGI1):c.1336A>G (p.Ile446Val) rs769204967
NM_005097.4(LGI1):c.1397A>G (p.Gln466Arg) rs1386173764
NM_005097.4(LGI1):c.1406A>G (p.Gln469Arg) rs1064796638
NM_005097.4(LGI1):c.1413G>A (p.Met471Ile) rs1057524845
NM_005097.4(LGI1):c.1421G>A (p.Arg474Gln) rs1064794249
NM_005097.4(LGI1):c.1516G>A (p.Ala506Thr) rs780353184
NM_005097.4(LGI1):c.1541T>G (p.Phe514Cys)
NM_005097.4(LGI1):c.1580_1581del (p.His527fs) rs1364913665
NM_005097.4(LGI1):c.1610T>G (p.Phe537Cys) rs2492920455
NM_005097.4(LGI1):c.1611T>G (p.Phe537Leu) rs934608672
NM_005097.4(LGI1):c.1636_1637del (p.Gln546fs)
NM_005097.4(LGI1):c.1643A>G (p.Tyr548Cys)
NM_005097.4(LGI1):c.1649_1650del (p.His550fs) rs2134027207
NM_005097.4(LGI1):c.216-4T>G rs2492803519
NM_005097.4(LGI1):c.272C>T (p.Pro91Leu) rs796052693
NM_005097.4(LGI1):c.294C>A (p.Phe98Leu) rs796052694
NM_005097.4(LGI1):c.297A>G (p.Thr99=) rs777027658
NM_005097.4(LGI1):c.311A>G (p.Asp104Gly)
NM_005097.4(LGI1):c.329del (p.Ala110fs) rs2134001099
NM_005097.4(LGI1):c.343C>T (p.Pro115Ser) rs1554905042
NM_005097.4(LGI1):c.347A>G (p.His116Arg) rs2059804726
NM_005097.4(LGI1):c.359+14_359+15delinsA rs1064795339
NM_005097.4(LGI1):c.359+5G>A
NM_005097.4(LGI1):c.388del (p.Ile130fs) rs1554905068
NM_005097.4(LGI1):c.396A>T (p.Arg132Ser)
NM_005097.4(LGI1):c.429C>G (p.His143Gln) rs752524884
NM_005097.4(LGI1):c.431+1G>A rs2134001459
NM_005097.4(LGI1):c.432-123dup rs200725559
NM_005097.4(LGI1):c.432-5dup rs61662431
NM_005097.4(LGI1):c.432-6_432-5dup rs61662431
NM_005097.4(LGI1):c.432-7_432-5dup rs61662431
NM_005097.4(LGI1):c.451C>T (p.Leu151Phe)
NM_005097.4(LGI1):c.460C>A (p.Leu154Ile) rs2059923858
NM_005097.4(LGI1):c.498A>C (p.Thr166=) rs1057523247
NM_005097.4(LGI1):c.547T>C (p.Trp183Arg) rs2134020823
NM_005097.4(LGI1):c.577G>A (p.Ala193Thr) rs2059947676
NM_005097.4(LGI1):c.592A>T (p.Ile198Phe) rs2492903956
NM_005097.4(LGI1):c.601G>A (p.Glu201Lys) rs2134020895
NM_005097.4(LGI1):c.602A>G (p.Glu201Gly)
NM_005097.4(LGI1):c.610C>T (p.Pro204Ser) rs2492904099
NM_005097.4(LGI1):c.611C>G (p.Pro204Arg) rs2492904109
NM_005097.4(LGI1):c.611dup (p.Glu205fs) rs2134020917
NM_005097.4(LGI1):c.661T>C (p.Cys221Arg)
NM_005097.4(LGI1):c.726T>G (p.Phe242Leu) rs2059951247
NM_005097.4(LGI1):c.742G>A (p.Glu248Lys) rs2492906078
NM_005097.4(LGI1):c.744G>C (p.Glu248Asp) rs199916185
NM_005097.4(LGI1):c.754A>G (p.Ile252Val) rs2492906161
NM_005097.4(LGI1):c.838+3A>G rs781205119
NM_005097.4(LGI1):c.86T>C (p.Leu29Pro) rs2133975470
NM_005097.4(LGI1):c.893T>C (p.Ile298Thr) rs2492917776
NM_005097.4(LGI1):c.898G>A (p.Ala300Thr)
NM_005097.4(LGI1):c.931C>T (p.Arg311Ter) rs886039496

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