ClinVar Miner

List of variants in gene NALCN reported as benign by GeneDx

Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:
Total variants: 124
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HGVS dbSNP gnomAD frequency
NM_052867.4(NALCN):c.2365-157A>G rs659303 0.90695
NM_052867.4(NALCN):c.3162+111_3162+112insCA rs113145864 0.76679
NM_052867.4(NALCN):c.4104-116G>A rs651737 0.75460
NM_052867.4(NALCN):c.3490-169G>A rs685177 0.75372
NM_052867.4(NALCN):c.3570T>C (p.Leu1190=) rs686141 0.74451
NM_052867.4(NALCN):c.2890-123G>T rs7331375 0.73334
NM_052867.4(NALCN):c.108+280T>C rs9557635 0.69463
NM_052867.4(NALCN):c.644+153G>A rs6491605 0.64692
NM_052867.4(NALCN):c.1267-218A>G rs9518354 0.63777
NM_052867.4(NALCN):c.1434+66T>C rs9518352 0.62994
NM_052867.4(NALCN):c.1434+126A>G rs4322520 0.62987
NM_052867.4(NALCN):c.1434+223A>G rs9518351 0.62985
NM_052867.4(NALCN):c.5023+268C>A rs632842 0.61674
NM_052867.4(NALCN):c.800-35G>A rs570252 0.54364
NM_052867.4(NALCN):c.3057+43C>A rs9300647 0.52585
NM_052867.4(NALCN):c.2118+114T>G rs673213 0.50060
NM_052867.4(NALCN):c.4756-107C>A rs2274085 0.48378
NM_052867.4(NALCN):c.2118+271G>T rs660622 0.47691
NM_052867.4(NALCN):c.4416A>C (p.Ile1472=) rs1289556 0.44370
NM_052867.4(NALCN):c.3885+230C>T rs7989798 0.44302
NM_052867.4(NALCN):c.799+261A>G rs9557620 0.42563
NM_052867.4(NALCN):c.3765+134A>T rs12430032 0.41675
NM_052867.4(NALCN):c.4103+280T>C rs633321 0.39888
NM_052867.4(NALCN):c.1267-162A>G rs9518353 0.38209
NM_052867.4(NALCN):c.2579+303G>A rs9513853 0.33260
NM_052867.4(NALCN):c.4104-284G>A rs9554752 0.32553
NM_052867.4(NALCN):c.3269+47G>A rs609246 0.31828
NM_052867.4(NALCN):c.3058-121C>A rs7981939 0.29800
NM_052867.4(NALCN):c.5024-256T>A rs734474 0.29207
NM_052867.4(NALCN):c.3714C>T (p.Thr1238=) rs17677552 0.28902
NM_052867.4(NALCN):c.1047+136T>G rs554997 0.28830
NM_052867.4(NALCN):c.1627-74A>G rs979680 0.26787
NM_052867.4(NALCN):c.1765-171T>G rs10508056 0.24618
NM_052867.4(NALCN):c.109-113C>T rs11617679 0.24018
NM_052867.4(NALCN):c.109-141_109-140insA rs76104046 0.23617
NM_052867.4(NALCN):c.2118+58G>T rs17484928 0.23239
NM_052867.4(NALCN):c.644+291A>G rs58488559 0.22587
NM_052867.4(NALCN):c.1764+319C>T rs2218298 0.22001
NM_052867.4(NALCN):c.375+159G>A rs59237663 0.21936
NM_052867.4(NALCN):c.376-221T>C rs12428662 0.21915
NM_052867.4(NALCN):c.375+84C>T rs59301533 0.21415
NM_052867.4(NALCN):c.3269+33T>C rs8000023 0.18061
NM_052867.4(NALCN):c.3270-162T>C rs35491955 0.15866
NM_052867.4(NALCN):c.4331-102A>T rs17581500 0.15320
NM_052867.4(NALCN):c.800-299A>G rs472879 0.15136
NM_052867.4(NALCN):c.800-92A>G rs471071 0.15132
NM_052867.4(NALCN):c.2637-35C>A rs41281138 0.11971
NM_052867.4(NALCN):c.2365-294del rs35197278 0.11486
NM_052867.4(NALCN):c.1134+263A>G rs12583478 0.10429
NM_052867.4(NALCN):c.1048-253T>G rs78873331 0.10324
NM_052867.4(NALCN):c.1134+176A>C rs946023 0.10324
NM_052867.4(NALCN):c.4605-275T>C rs9585609 0.08040
NM_052867.4(NALCN):c.4447-252C>T rs9585613 0.07872
NM_052867.4(NALCN):c.3584-132C>A rs9518299 0.06595
NM_052867.4(NALCN):c.108+92A>T rs61973730 0.06457
NM_052867.4(NALCN):c.3210C>T (p.Asn1070=) rs9513851 0.06211
NM_052867.4(NALCN):c.3163-90C>T rs1151376 0.05883
NM_052867.4(NALCN):c.3269+204A>G rs608726 0.05808
NM_052867.4(NALCN):c.4330+253T>C rs589052 0.05156
NM_052867.4(NALCN):c.4756-255T>C rs17620763 0.04842
NM_052867.4(NALCN):c.1840-227G>A rs642829 0.04784
NM_052867.4(NALCN):c.4755+149T>C rs676373 0.04780
NM_052867.4(NALCN):c.2193-129C>T rs10508053 0.04764
NM_052867.4(NALCN):c.4447-325G>C rs651552 0.04741
NM_052867.4(NALCN):c.4104-34T>C rs635491 0.04716
NM_052867.4(NALCN):c.4197+56G>A rs640080 0.04710
NM_052867.4(NALCN):c.3886-308T>C rs1151372 0.04663
NM_052867.4(NALCN):c.1435-295C>T rs16958677 0.04292
NM_052867.4(NALCN):c.292-144_292-138del rs67553179 0.04205
NM_052867.4(NALCN):c.-39-45G>A rs76401447 0.04156
NM_052867.4(NALCN):c.1840-25T>C rs643715 0.04103
NM_052867.4(NALCN):c.1764+144A>G rs16958609 0.04007
NM_052867.4(NALCN):c.1764+294C>T rs16958606 0.03917
NM_052867.4(NALCN):c.1836A>G (p.Lys612=) rs17582557 0.03651
NM_052867.4(NALCN):c.800-239G>A rs61973666 0.03069
NM_052867.4(NALCN):c.2637-10T>G rs16958350 0.02553
NM_052867.4(NALCN):c.799+163C>T rs76856496 0.02177
NM_052867.4(NALCN):c.799+219G>A rs76798318 0.02176
NM_052867.4(NALCN):c.1977-229G>A rs75151909 0.02165
NM_052867.4(NALCN):c.2305C>T (p.His769Tyr) rs76776920 0.01886
NM_052867.4(NALCN):c.376-237C>T rs16958874 0.01813
NM_052867.4(NALCN):c.1134+22A>G rs78369250 0.01721
NM_052867.4(NALCN):c.4331-176A>G rs17620886 0.01598
NM_052867.4(NALCN):c.2365-84T>C rs115332418 0.01574
NM_052867.4(NALCN):c.2119-247C>T rs16958418 0.01567
NM_052867.4(NALCN):c.2520C>T (p.Val840=) rs34513106 0.01324
NM_052867.4(NALCN):c.2592C>T (p.Asp864=) rs35991817 0.01203
NM_052867.4(NALCN):c.2118+187G>T rs146138824 0.01068
NM_052867.4(NALCN):c.4604+168C>T rs17620834 0.01024
NM_052867.4(NALCN):c.2192+5C>T rs41281140 0.00972
NM_052867.4(NALCN):c.1839+32A>G rs3764105 0.00820
NM_052867.4(NALCN):c.4756-177dup rs140118426 0.00686
NM_052867.4(NALCN):c.2241C>T (p.Pro747=) rs79264337 0.00512
NM_052867.4(NALCN):c.1134+161dup rs200513039
NM_052867.4(NALCN):c.1435-246G>A rs7326909
NM_052867.4(NALCN):c.1435-86_1435-82del rs67852428
NM_052867.4(NALCN):c.1593C>T (p.Val531=) rs3916906
NM_052867.4(NALCN):c.1764+13dup rs5806198
NM_052867.4(NALCN):c.1840-194del rs142301327
NM_052867.4(NALCN):c.1977-260_1977-259dup rs71292843
NM_052867.4(NALCN):c.1977-260dup rs71292843
NM_052867.4(NALCN):c.2193-14dup rs66537139
NM_052867.4(NALCN):c.2890-240AC[8] rs35723947
NM_052867.4(NALCN):c.292-246del rs139408630
NM_052867.4(NALCN):c.3057+238C>G rs650273
NM_052867.4(NALCN):c.3162+109del rs57703343
NM_052867.4(NALCN):c.375+124ATTTT[2] rs57317466
NM_052867.4(NALCN):c.376-251A>T rs12427747
NM_052867.4(NALCN):c.3955-50CT[11] rs34229756
NM_052867.4(NALCN):c.3955-50CT[9] rs34229756
NM_052867.4(NALCN):c.4103+170dup rs11408956
NM_052867.4(NALCN):c.4447-69_4447-68del rs113202388
NM_052867.4(NALCN):c.4755+266A>G rs7336126
NM_052867.4(NALCN):c.4755+291G>A rs7334650
NM_052867.4(NALCN):c.4756-306_4756-305del rs376972545
NM_052867.4(NALCN):c.4905+132_4905+133dup rs35627368
NM_052867.4(NALCN):c.4905+132dup rs35627368
NM_052867.4(NALCN):c.4905+143del rs35627368
NM_052867.4(NALCN):c.4906-188C>T rs12584362
NM_052867.4(NALCN):c.5024-179dup rs138944235
NM_052867.4(NALCN):c.644+114_644+117del rs10590149
NM_052867.4(NALCN):c.644+159ATTTT[4] rs149479126
NM_052867.4(NALCN):c.644+159ATTTT[6] rs149479126
NM_052867.4(NALCN):c.645-300TAGA[10] rs71676800

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