ClinVar Miner

Variants from Science for Life laboratory, Karolinska Institutet

Location: Sweden — Primary collection method: not provided
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic likely pathogenic uncertain significance likely benign benign total
0 0 407 0 0 407

Gene and significance breakdown #

Total genes and gene combinations: 389
Download table as spreadsheet
Gene or gene combination uncertain significance total
TP53 5 5
MAPT 3 3
PARD3 3 3
COG1 2 2
KDM6A 2 2
KIF16B 2 2
KPRP 2 2
LRP1B 2 2
MACF1 2 2
SEZ6L 2 2
SPOP 2 2
VCAN 2 2
WDFY3 2 2
ABCA3 1 1
ABCC4 1 1
ABCE1 1 1
ABCF3 1 1
ABCG4 1 1
ACRV1 1 1
ADAMTS3 1 1
ADAT1 1 1
ADRM1 1 1
AGBL4, BEND5 1 1
AGPAT2 1 1
AIFM1, RAB33A 1 1
AKAP1 1 1
AKAP2, PALM2-AKAP2 1 1
AKR1C3 1 1
ALDH5A1 1 1
ANO9 1 1
AP3B1 1 1
ARAP3 1 1
ARHGAP20 1 1
ARHGEF15 1 1
ARHGEF25 1 1
ARMC12 1 1
ARPP21 1 1
ASIC2 1 1
ASPRV1 1 1
ATG13 1 1
ATP1A1 1 1
ATP2B4 1 1
ATP6V0A1 1 1
B3GALT1, LOC105616981 1 1
BABAM2 1 1
BICRAL 1 1
BNIP5 1 1
BRF2 1 1
BTBD16 1 1
C2CD6 1 1
C3AR1 1 1
C5 1 1
C8orf44-SGK3, SGK3 1 1
CABIN1 1 1
CACNA1D 1 1
CADM3 1 1
CADPS 1 1
CAND1 1 1
CAPN6 1 1
CASK, GPR82 1 1
CASR 1 1
CBX7 1 1
CBY1 1 1
CCDC171 1 1
CD244 1 1
CDH3 1 1
CDKN2AIP 1 1
CERS3 1 1
CFAP43 1 1
CFAP65 1 1
CHAC1 1 1
CHAF1B 1 1
CHD2 1 1
CHGB 1 1
CKAP5 1 1
CLPTM1L 1 1
CNTFR 1 1
COL1A1 1 1
COL5A1 1 1
COPS6 1 1
CORIN 1 1
CPA6, LOC102724708 1 1
CPSF7 1 1
CRTC3 1 1
CRX 1 1
CSMD2 1 1
CTNNB1 1 1
CTRB1 1 1
CTSE 1 1
CYSLTR1 1 1
DCHS2 1 1
DEAF1 1 1
DGAT2L6 1 1
DGCR6L 1 1
DHX29 1 1
DIS3L 1 1
DLAT 1 1
DLL1 1 1
DNAH3 1 1
DNAH8 1 1
DNAH9 1 1
DPH7 1 1
DPPA4 1 1
DPYD 1 1
DSCAML1 1 1
DYM 1 1
EFCAB6 1 1
EIF4G3 1 1
ELOA2, KATNAL2 1 1
ENOX1 1 1
ENPP7 1 1
ENTPD3 1 1
ERBB2 1 1
ERBB3 1 1
ERBIN 1 1
EXOC2 1 1
EYA1 1 1
F2 1 1
F5 1 1
FAM13C 1 1
FAM189A2 1 1
FAM83C 1 1
FAXC 1 1
FBH1 1 1
FBN2 1 1
FGD2 1 1
FPR1 1 1
FREM2 1 1
GABRB2 1 1
GABRG1 1 1
GAPDHS, TMEM147 1 1
GDF10 1 1
GFRA3 1 1
GLI1 1 1
GNGT1 1 1
GNPAT 1 1
GPHN, PIGH 1 1
GPR26 1 1
GPR55 1 1
GRIN1 1 1
GRM8 1 1
GRWD1 1 1
GUSB 1 1
HEBP2 1 1
HEPACAM2 1 1
HHIPL1 1 1
HIF1A 1 1
HIPK4 1 1
HIRA 1 1
HLF 1 1
HMCN1 1 1
HPS3 1 1
HTR2C 1 1
HTR5A 1 1
IBTK 1 1
IFIH1 1 1
IFT43 1 1
IGF2R 1 1
IL33 1 1
IMPG2 1 1
ING4 1 1
INMT, INMT-MINDY4 1 1
INTS3 1 1
INTS8 1 1
IRGQ 1 1
ITGAD 1 1
ITGB6 1 1
ITIH5 1 1
ITPRIPL1 1 1
KAT7 1 1
KCNF1 1 1
KCNJ1 1 1
KCNJ4 1 1
KCNN3 1 1
KCNQ3 1 1
KCNQ5 1 1
KDM3A 1 1
KDR 1 1
KIAA0100 1 1
KIAA1755 1 1
KIF12 1 1
KIF5A 1 1
KIR2DL3 1 1
KIR3DL1 1 1
KLHL20 1 1
KMT5A 1 1
KRT1 1 1
KRT33A 1 1
KRT9 1 1
LAMA5 1 1
LARP1B 1 1
LMAN1L 1 1
LMLN 1 1
LOC100128006, MYOCD 1 1
LOC100379224, ZNF224 1 1
LOC101926905, PCDHB1, PCDHB@ 1 1
LOC101928034, S100A3 1 1
LOC102723833, USH2A 1 1
LOC108021846, SOX9 1 1
LONP2 1 1
LRP6 1 1
LRPAP1 1 1
LRRC37A3 1 1
MAGI2 1 1
MAMDC2 1 1
MAML1 1 1
MAMLD1 1 1
MAPK10 1 1
MDP1, NEDD8-MDP1 1 1
MED1 1 1
MRPL46 1 1
MTBP 1 1
MTHFR 1 1
MUC17 1 1
MUC6 1 1
MXRA5 1 1
MYCBP2 1 1
MYH3 1 1
MYH8, MYHAS 1 1
MYLK 1 1
MYO16 1 1
MYO1A 1 1
MYOT 1 1
MYRF 1 1
NAPB 1 1
NBN 1 1
NECAP2 1 1
NEK9 1 1
NELL1 1 1
NETO2 1 1
NHS 1 1
NLRP1 1 1
NMD3 1 1
NOTCH3 1 1
NR3C1 1 1
NTN4 1 1
NWD1 1 1
OLA1 1 1
OLFML3 1 1
OR14A16 1 1
OR1S2 1 1
OR2T1 1 1
OR2Z1 1 1
OR4C12 1 1
OR5AC2 1 1
OR5L1 1 1
OR6K2 1 1
OR8K3 1 1
OXA1L 1 1
PAK4 1 1
PCDHA1, PCDHA10, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9, PCDHA@ 1 1
PCNX1 1 1
PDE1C 1 1
PDE6B 1 1
PDE7B 1 1
PDP2 1 1
PGPEP1 1 1
PHF2 1 1
PIK3R1 1 1
PITX2 1 1
PKD2L1 1 1
PKHD1 1 1
PLB1 1 1
PLCB4 1 1
PLEKHA4 1 1
PLEKHG1 1 1
PLEKHG4B 1 1
PODN 1 1
POLN 1 1
PPP1R3C 1 1
PPP2R5C 1 1
PPP6R2 1 1
PPRC1 1 1
PREX2 1 1
PRH1, PRH1-PRR4, PRH1-TAS2R14, TAS2R20 1 1
PRKD1 1 1
PRPH2 1 1
PRSS22 1 1
PSMC1 1 1
PTPN21 1 1
PTPN3 1 1
PTPRD 1 1
PTPRN2 1 1
PYCR3 1 1
PYHIN1 1 1
RAB11FIP4 1 1
RAC2 1 1
RAD50 1 1
RAPH1 1 1
RASAL2 1 1
RBAK, RBAK-RBAKDN 1 1
RERGL 1 1
RHOBTB2 1 1
RIPOR3 1 1
RLIM 1 1
RPL10L 1 1
RPS6KC1 1 1
RPUSD1 1 1
RUBCNL 1 1
SAFB2 1 1
SBNO1 1 1
SCNN1A 1 1
SCRN1 1 1
SCUBE3 1 1
SDK1 1 1
SERPINB4 1 1
SF3B3 1 1
SHCBP1L 1 1
SI 1 1
SKIL 1 1
SLC13A3 1 1
SLC16A2 1 1
SLC25A22 1 1
SLC25A47 1 1
SLC2A4RG 1 1
SLC34A1 1 1
SLC35C1 1 1
SLC35G1 1 1
SLC46A3 1 1
SLC5A2 1 1
SLC5A7 1 1
SLC6A9 1 1
SLC8A3 1 1
SMUG1 1 1
SORBS1 1 1
SORCS1 1 1
SPATA18 1 1
SPECC1L, SPECC1L-ADORA2A 1 1
SSBP2 1 1
ST8SIA6 1 1
STX8 1 1
STXBP1 1 1
SUFU 1 1
SV2B 1 1
SYCP2 1 1
SYNGR1 1 1
TEX14 1 1
TF 1 1
TG 1 1
TGFBR3 1 1
THBS3 1 1
TMCO5A 1 1
TMEM183A 1 1
TMEM230 1 1
TMEM94 1 1
TMPRSS2 1 1
TNFRSF8 1 1
TOPORS 1 1
TP63 1 1
TRIM28 1 1
TRIM34, TRIM5 1 1
TRIML1 1 1
TRIP12 1 1
TRPC1 1 1
TRPC4 1 1
TRPM3 1 1
TRRAP 1 1
TSHZ3 1 1
TSNAXIP1 1 1
TSPAN5 1 1
TTC37 1 1
ULK2 1 1
UNC79 1 1
URB2 1 1
USF2 1 1
USP28 1 1
USP48 1 1
VKORC1L1 1 1
WDR49 1 1
WWC3 1 1
YTHDC2 1 1
ZDHHC8 1 1
ZKSCAN1 1 1
ZMAT3 1 1
ZNF100 1 1
ZNF136 1 1
ZNF184 1 1
ZNF287 1 1
ZNF304 1 1
ZNF419 1 1
ZNF431 1 1
ZNF48 1 1
ZNF534 1 1
ZNF560 1 1
ZNF717 1 1
ZNF772 1 1
ZNF776 1 1
ZP4 1 1
ZSCAN2 1 1

Condition and significance breakdown #

Total conditions: 1
Download table as spreadsheet
Condition uncertain significance total
Malignant tumor of prostate 407 407

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