ClinVar Miner

List of variants reported by Genome Sciences Centre, British Columbia Cancer Agency

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Total variants: 75
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HGVS dbSNP gnomAD frequency
NM_000791.4(DHFR):c.-416C>G rs2001675 0.00949
NM_007194.4(CHEK2):c.1100del (p.Thr367fs) rs555607708 0.00181
NM_000321.3(RB1):c.1981C>T (p.Arg661Trp) rs137853294 0.00002
NM_000546.6(TP53):c.743G>A (p.Arg248Gln) rs11540652 0.00002
NM_032221.5(CHD6):c.3296G>A (p.Arg1099Gln) rs1465002801 0.00001
NC_000010.10:g.43611191_61663279inv
NC_000013.10:g.114819939_qterdelins[96729864_114814234inv;96735632_104289803]
NM_000038.6(APC):c.1682del (p.Lys561fs) rs1554082118
NM_000038.6(APC):c.3927_3931del (p.Glu1309fs) rs121913224
NM_000038.6(APC):c.3956del (p.Pro1319fs) rs1057517558
NM_000038.6(APC):c.847C>T (p.Arg283Ter) rs786201856
NM_000051.4(ATM):c.1837_1839del (p.Val613del) rs2135353566
NM_000059.4(BRCA2):c.3504G>T (p.Met1168Ile) rs1555283267
NM_000141.5(FGFR2):c.1144T>C (p.Cys382Arg) rs121913474
NM_000179.3(MSH6):c.3644T>A (p.Leu1215Ter) rs2104526529
NM_000215.4(JAK3):c.1765G>A (p.Gly589Ser) rs886039394
NM_000249.4(MLH1):c.884G>T (p.Ser295Ile) rs63750144
NM_000489.6(ATRX):c.1558G>T (p.Val520Phe) rs1287383551
NM_000489.6(ATRX):c.3904del (p.Arg1302fs) rs2148497062
NM_000489.6(ATRX):c.4213A>G (p.Arg1405Gly) rs1569535987
NM_000489.6(ATRX):c.6235C>T (p.Arg2079Ter) rs2148020083
NM_000489.6(ATRX):c.6440G>T (p.Ser2147Ile) rs1569523183
NM_000546.6(TP53):c.818G>T (p.Arg273Leu) rs28934576
NM_000546.6(TP53):c.856G>A (p.Glu286Lys) rs786201059
NM_000546.6(TP53):c.919+1G>T rs1131691039
NM_001042492.3(NF1):c.6852_6855del (p.Tyr2285fs) rs1555535032
NM_001123385.2(BCOR):c.398_399insAC (p.Ala134fs) rs1555919960
NM_001123385.2(BCOR):c.4063G>T (p.Glu1355Ter) rs780712297
NM_001123385.2(BCOR):c.4787_4802del (p.Gly1596fs) rs1555913337
NM_001130823.3(DNMT1):c.1645-1G>T rs1568234664
NM_001141969.2(DAXX):c.1178del (p.Lys393fs) rs1359674497
NM_001141969.2(DAXX):c.329_330del (p.Leu109_Ser110insTer) rs1554283140
NM_001141969.2(DAXX):c.801_824del (p.Arg269_Asn276del) rs1554282803
NM_001141969.2(DAXX):c.850C>T (p.Pro284Ser) rs1554282793
NM_001197104.2(KMT2A):c.2318dup (p.Ser774fs) rs782297546
NM_001370259.2(MEN1):c.1579C>T (p.Arg527Ter) rs104894261
NM_001370259.2(MEN1):c.245_259del (p.Asp82_Ile86del) rs1555166508
NM_001370259.2(MEN1):c.783+1G>A rs794728652
NM_001370259.2(MEN1):c.981_1006del (p.Tyr327_Glu336delinsTer) rs1555165008
NM_001372327.1(SLC29A1):c.20C>T (p.Pro7Leu) rs1582941569
NM_001374828.1(ARID1B):c.4453C>T (p.Gln1485Ter) rs2128366503
NM_001386298.1(CIC):c.3017_3018insT (p.Gly1008fs) rs1568503055
NM_001386298.1(CIC):c.3370C>T (p.Arg1124Trp) rs1568504941
NM_002430.3(MN1):c.772_776del (p.His258fs) rs1568986076
NM_002430.3(MN1):c.785del (p.Gly262fs) rs1568986066
NM_003070.5(SMARCA2):c.3638G>C (p.Arg1213Pro) rs1314729940
NM_003072.5(SMARCA4):c.276G>C (p.Gln92His) rs1555752030
NM_003073.5(SMARCB1):c.110G>C (p.Arg37Pro) rs398122368
NM_003482.4(KMT2D):c.11047C>T (p.Gln3683Ter) rs1565779530
NM_004656.4(BAP1):c.188C>G (p.Ser63Cys) rs747311942
NM_004656.4(BAP1):c.374A>C (p.Glu125Ala) rs1553645926
NM_004958.4(MTOR):c.6625C>G (p.Leu2209Val) rs774204282
NM_004972.4(JAK2):c.2385G>T (p.Arg795Ser) rs1819621092
NM_004985.5(KRAS):c.182A>T (p.Gln61Leu) rs121913240
NM_004985.5(KRAS):c.34G>C (p.Gly12Arg) rs121913530
NM_004991.4(MECOM):c.2200C>T (p.Gln734Ter) rs1553838272
NM_005228.5(EGFR):c.3055C>A (p.Pro1019Thr) rs1562805765
NM_005228.5(EGFR):c.3056C>A (p.Pro1019Gln) rs1562805773
NM_006218.4(PIK3CA):c.112C>T (p.Arg38Cys) rs749415085
NM_006218.4(PIK3CA):c.2086G>A (p.Gly696Arg) rs2108413471
NM_017617.5(NOTCH1):c.2825G>A (p.Cys942Tyr) rs1554728658
NM_017617.5(NOTCH1):c.4045_4052del (p.Ala1349fs) rs1554728034
NM_139276.3(STAT3):c.1467T>A (p.Asn489Lys) rs1555564365
NM_152641.4(ARID2):c.2989C>T (p.Gln997Ter) rs1555155110
NM_203500.2(KEAP1):c.700C>T (p.Arg234Trp) rs1599484704
Single allele
dup(11)(q13.1q13.1)
inv(22)(q12.2q12.2)
t(12;16)(q13.13;p11.2)
t(17;19)(q25.1;p13.3)
t(5;22)(q31.2;q12.1)
t(6;9)(q23.3;p22.3)
t(8;9)(q13.1;p22.3)
t(8;9)(q24.22;q34.13)
t(X;8)(p22.13;q12.1)

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