ClinVar Miner

List of variants reported as likely benign by Leiden Open Variation Database

Minimum submission review status: Collection method:
Minimum conflict level:
ClinVar version:
Total variants: 236
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HGVS dbSNP gnomAD frequency
NM_024675.4(PALB2):c.3114-51= rs249936 0.99999
NM_001018113.3(FANCB):c.2166-176A>G rs6527026 0.99693
NM_001018113.3(FANCB):c.2166-186T>C rs6527027 0.98887
NM_000322.5(PRPH2):c.929G>A (p.Arg310Lys) rs425876 0.92861
NM_000322.5(PRPH2):c.910C>G (p.Gln304Glu) rs390659 0.78498
NM_032444.4(SLX4):c.4500T>C (p.Asn1500=) rs3810812 0.63612
NM_001018113.3(FANCB):c.951+129A>C rs2375729 0.63356
NM_001018113.3(FANCB):c.-173G>C rs2188383 0.63320
NM_032043.3(BRIP1):c.2755T>C (p.Ser919Pro) rs4986764 0.61453
NM_000322.5(PRPH2):c.318T>C (p.Val106=) rs7764439 0.59853
NM_000322.5(PRPH2):c.582-67T>A rs3818086 0.56178
NM_001018113.3(FANCB):c.-70-246C>T rs5935816 0.55158
NM_001018113.3(FANCB):c.1327-10T>C rs2905223 0.53797
NM_000136.3(FANCC):c.996+1752A>G rs881791 0.45786
NM_000322.5(PRPH2):c.582-85G>A rs34722725 0.25301
NM_000322.5(PRPH2):c.829-48C>T rs41273820 0.22114
NM_032444.4(SLX4):c.753G>A (p.Ala251=) rs8061528 0.21914
NM_032444.4(SLX4):c.3365C>T (p.Pro1122Leu) rs714181 0.20566
NM_058216.3(RAD51C):c.-26C>T rs12946397 0.18608
NM_032444.4(SLX4):c.4739+24G>T rs12933120 0.09148
NM_032444.4(SLX4):c.1366+11T>C rs76350200 0.08654
NM_032444.4(SLX4):c.*8A>G rs3751839 0.08334
NM_032444.4(SLX4):c.2012T>C (p.Leu671Ser) rs77985244 0.07388
NM_032444.4(SLX4):c.2013+137G>C rs80186343 0.07384
NM_032444.4(SLX4):c.610C>T (p.Arg204Cys) rs79842542 0.07023
NM_032444.4(SLX4):c.1371T>G (p.Asn457Lys) rs74319927 0.06397
NM_032444.4(SLX4):c.1152A>G (p.Pro384=) rs112511042 0.06386
NM_032444.4(SLX4):c.1156A>G (p.Met386Val) rs113490934 0.06384
NM_032444.4(SLX4):c.2013+23G>A rs112226642 0.06373
NM_032444.4(SLX4):c.2160+50C>T rs75762935 0.06369
NM_032444.4(SLX4):c.4637-227C>T rs75693937 0.05798
NM_032444.4(SLX4):c.*113C>T rs76661336 0.04982
NM_032444.4(SLX4):c.555C>T (p.Asp185=) rs74640850 0.04956
NM_032444.4(SLX4):c.3662C>T (p.Ala1221Val) rs3827530 0.04930
NM_032444.4(SLX4):c.678C>T (p.His226=) rs28516461 0.04916
NM_032444.4(SLX4):c.3812C>T (p.Ser1271Phe) rs3810813 0.04718
NM_032444.4(SLX4):c.3162G>A (p.Ser1054=) rs76488917 0.03405
NM_032444.4(SLX4):c.3783G>A (p.Pro1261=) rs77699867 0.02290
NM_032444.4(SLX4):c.4581G>A (p.Pro1527=) rs78635099 0.02283
NM_032444.4(SLX4):c.4637-110T>C rs74005837 0.02262
NM_000135.4(FANCA):c.2151G>T (p.Met717Ile) rs1131660 0.02234
NM_032444.4(SLX4):c.2824G>C (p.Glu942Gln) rs114014006 0.01879
NM_032444.4(SLX4):c.761-32T>G rs118098382 0.01011
NM_032444.4(SLX4):c.999C>T (p.Ile333=) rs7198338 0.00974
NM_032444.4(SLX4):c.1153C>A (p.Pro385Thr) rs115694169 0.00968
NM_032444.4(SLX4):c.2161-136G>A rs139226142 0.00967
NM_024675.4(PALB2):c.2586+81C>T rs114710547 0.00885
NM_032444.4(SLX4):c.710G>A (p.Arg237Gln) rs138615800 0.00848
NM_032444.4(SLX4):c.3963G>A (p.Pro1321=) rs116781836 0.00774
NM_024675.4(PALB2):c.2996+183del rs199767268 0.00748
NM_032444.4(SLX4):c.2924C>T (p.Pro975Leu) rs114472821 0.00679
NM_032444.4(SLX4):c.1803G>A (p.Ser601=) rs144892556 0.00649
NM_032444.4(SLX4):c.1925-30G>A rs149916101 0.00641
NM_032444.4(SLX4):c.1755C>T (p.Pro585=) rs114016359 0.00638
NM_024675.3(PALB2):c.-158G>C rs138200248 0.00631
NM_032444.4(SLX4):c.90C>T (p.Ser30=) rs118089506 0.00612
NM_032444.4(SLX4):c.5501A>G (p.Asn1834Ser) rs111738042 0.00575
NM_024675.4(PALB2):c.53A>G (p.Lys18Arg) rs138789658 0.00530
NM_024675.4(PALB2):c.2794G>A (p.Val932Met) rs45624036 0.00449
NM_024675.4(PALB2):c.3113+131G>T rs150730533 0.00355
NM_032444.4(SLX4):c.1925-95G>A rs180740748 0.00309
NM_032444.4(SLX4):c.3857C>T (p.Ala1286Val) rs149011965 0.00302
NM_024675.4(PALB2):c.2590C>T (p.Pro864Ser) rs45568339 0.00287
NM_032444.4(SLX4):c.1924+127G>A rs563725168 0.00261
NM_032444.4(SLX4):c.4648C>T (p.Arg1550Trp) rs77021998 0.00214
NM_024675.4(PALB2):c.1810C>T (p.Leu604=) rs144015319 0.00202
NM_024675.4(PALB2):c.721A>G (p.Asn241Asp) rs113217267 0.00202
NM_024675.4(PALB2):c.2514+71del rs180177114 0.00197
NM_024675.4(PALB2):c.1606C>T (p.Leu536=) rs151162255 0.00193
NM_024675.4(PALB2):c.2256A>G (p.Gly752=) rs147120218 0.00193
NM_032444.4(SLX4):c.2328-9G>C rs73505419 0.00188
NM_024675.4(PALB2):c.2996+124C>T rs151026179 0.00164
NM_024675.4(PALB2):c.400G>A (p.Asp134Asn) rs139555085 0.00160
NM_032444.4(SLX4):c.3109T>C (p.Leu1037=) rs58735123 0.00148
NM_024675.4(PALB2):c.*232G>T rs180748355 0.00141
NM_032444.4(SLX4):c.4024A>G (p.Ser1342Gly) rs140051968 0.00141
NM_024675.3(PALB2):c.*347A>C rs515726053 0.00140
NM_024675.4(PALB2):c.2748+121T>C rs515726093 0.00131
NM_032444.4(SLX4):c.2359G>A (p.Glu787Lys) rs140600202 0.00125
NM_024675.4(PALB2):c.2816T>G (p.Leu939Trp) rs45478192 0.00121
NM_024675.4(PALB2):c.3495G>A (p.Ser1165=) rs45439097 0.00121
NM_032444.4(SLX4):c.590T>C (p.Val197Ala) rs147826749 0.00115
NM_032444.4(SLX4):c.536-80C>T rs137869443 0.00112
NM_058216.3(RAD51C):c.195A>G (p.Arg65=) rs45511291 0.00105
NM_024675.4(PALB2):c.1194G>A (p.Val398=) rs61755173 0.00103
NM_024675.4(PALB2):c.909C>T (p.Leu303=) rs145788619 0.00101
NM_024675.4(PALB2):c.2365C>T (p.Leu789=) rs145805054 0.00099
NM_032444.4(SLX4):c.1372A>G (p.Lys458Glu) rs149126845 0.00087
NM_024675.4(PALB2):c.2587-38C>G rs180177119 0.00082
NM_024675.4(PALB2):c.2835-27C>T rs199757736 0.00079
NM_032444.4(SLX4):c.2786C>T (p.Pro929Leu) rs117707719 0.00078
NM_058216.3(RAD51C):c.146-8A>G rs201079501 0.00074
NM_032444.4(SLX4):c.4261A>T (p.Ile1421Phe) rs141567438 0.00069
NM_032444.4(SLX4):c.2667A>G (p.Gln889=) rs146790631 0.00066
NM_000322.5(PRPH2):c.708C>T (p.Tyr236=) rs61755813 0.00062
NM_024675.4(PALB2):c.2996+17T>C rs180177128 0.00060
NM_032444.4(SLX4):c.3178C>T (p.Arg1060Trp) rs144273492 0.00059
NM_024675.4(PALB2):c.2851T>C (p.Ser951Pro) rs149522412 0.00058
NM_024675.4(PALB2):c.2749-18C>T rs182194007 0.00055
NM_024675.4(PALB2):c.23C>T (p.Pro8Leu) rs150390726 0.00051
NM_024675.4(PALB2):c.3201+96G>A rs373044186 0.00050
NM_032444.4(SLX4):c.2681T>G (p.Val894Gly) rs145137472 0.00036
NM_032444.4(SLX4):c.2609C>T (p.Ala870Val) rs149584080 0.00031
NM_032444.4(SLX4):c.3368C>A (p.Ser1123Tyr) rs144647122 0.00031
NM_032444.4(SLX4):c.1924+59C>T rs577529582 0.00028
NM_000322.5(PRPH2):c.94A>G (p.Ile32Val) rs61755767 0.00026
NM_024675.4(PALB2):c.1000T>G (p.Tyr334Asp) rs202241382 0.00026
NM_024675.4(PALB2):c.656A>G (p.Asp219Gly) rs45594034 0.00021
NM_024675.4(PALB2):c.1492G>T (p.Asp498Tyr) rs75023630 0.00020
NM_032444.4(SLX4):c.465A>G (p.Glu155=) rs138512851 0.00020
NM_032444.4(SLX4):c.4637-234G>A rs570144493 0.00019
NM_024675.4(PALB2):c.2135C>T (p.Ala712Val) rs141458731 0.00017
NM_024675.4(PALB2):c.3054G>C (p.Glu1018Asp) rs183489969 0.00016
NM_032444.4(SLX4):c.2014-28G>A rs200455476 0.00016
NM_032444.4(SLX4):c.2628C>T (p.Asp876=) rs201279467 0.00016
NM_032444.4(SLX4):c.3315C>T (p.Ser1105=) rs183029626 0.00015
NM_024675.4(PALB2):c.212-70T>C rs515726080 0.00014
NM_024675.4(PALB2):c.2586+10A>G rs373321719 0.00014
NM_032444.4(SLX4):c.1367-44G>T rs185962726 0.00011
NM_024675.3(PALB2):c.-194C>G rs515726054 0.00010
NM_024675.4(PALB2):c.48+27G>T rs515726119 0.00010
NM_024675.4(PALB2):c.1431C>T (p.Thr477=) rs515726068 0.00009
NM_024675.4(PALB2):c.3114-40T>G rs515726105 0.00009
NM_024675.4(PALB2):c.344G>T (p.Gly115Val) rs145598272 0.00009
NM_032444.4(SLX4):c.1641G>A (p.Thr547=) rs200497436 0.00009
NM_032444.4(SLX4):c.1163+194C>T rs778268816 0.00007
NM_024675.4(PALB2):c.1935G>A (p.Glu645=) rs141707455 0.00006
NM_024675.4(PALB2):c.765T>C (p.Asp255=) rs45465299 0.00006
NM_032444.4(SLX4):c.1702G>A (p.Val568Met) rs371825444 0.00006
NM_032444.4(SLX4):c.2949C>T (p.Tyr983=) rs758944750 0.00006
NM_032444.4(SLX4):c.4530G>T (p.Leu1510=) rs139254595 0.00006
NM_024675.4(PALB2):c.2442G>A (p.Glu814=) rs140776736 0.00005
NM_032444.4(SLX4):c.237T>C (p.Ala79=) rs375620914 0.00005
NM_032444.4(SLX4):c.3019C>A (p.Gln1007Lys) rs138798067 0.00005
NM_024675.4(PALB2):c.2067G>A (p.Ser689=) rs371149159 0.00004
NM_024675.4(PALB2):c.3114-42G>T rs515726106 0.00004
NM_024675.4(PALB2):c.3252G>A (p.Ser1084=) rs141570833 0.00004
NM_032444.4(SLX4):c.1271C>T (p.Ala424Val) rs551823420 0.00004
NM_032444.4(SLX4):c.4272C>T (p.Asp1424=) rs771297945 0.00003
NM_032444.4(SLX4):c.4637-267C>T rs867613294 0.00003
NM_058216.3(RAD51C):c.783A>G (p.Leu261=) rs138643096 0.00003
NM_058216.3(RAD51C):c.7G>A (p.Gly3Arg) rs376403182 0.00003
NM_024675.4(PALB2):c.1743A>G (p.Leu581=) rs180177105 0.00002
NM_024675.4(PALB2):c.3202-45A>G rs370826543 0.00002
NM_024675.4(PALB2):c.746C>T (p.Pro249Leu) rs759810283 0.00002
NM_024675.4(PALB2):c.807T>C (p.Gly269=) rs180177093 0.00002
NM_024675.4(PALB2):c.897T>C (p.Ser299=) rs180177095 0.00002
NM_032444.4(SLX4):c.4427C>G (p.Thr1476Ser) rs372321470 0.00002
NM_000322.5(PRPH2):c.299C>T (p.Pro100Leu) rs768400169 0.00001
NM_005431.2(XRCC2):c.223G>C (p.Glu75Gln) rs1327414828 0.00001
NM_024675.4(PALB2):c.-25C>A rs515726056 0.00001
NM_024675.4(PALB2):c.109-5T>C rs749299119 0.00001
NM_024675.4(PALB2):c.2515-24A>G rs515726089 0.00001
NM_024675.4(PALB2):c.2859T>C (p.Asp953=) rs515726101 0.00001
NM_024675.4(PALB2):c.3024C>T (p.Pro1008=) rs180177130 0.00001
NM_024675.4(PALB2):c.3350+11A>G rs515726114 0.00001
NM_024675.4(PALB2):c.3350+16T>G rs515726115 0.00001
NM_024675.4(PALB2):c.3483T>C (p.Phe1161=) rs372686500 0.00001
NM_032444.4(SLX4):c.1736T>C (p.Leu579Pro) rs772504776 0.00001
NM_032444.4(SLX4):c.1845C>T (p.Leu615=) rs1056084 0.00001
NM_032444.4(SLX4):c.4410G>A (p.Pro1470=) rs1555449966 0.00001
NM_032444.4(SLX4):c.4797C>T (p.Phe1599=) rs1159059195 0.00001
NM_032444.4(SLX4):c.4887C>T (p.Leu1629=) rs761814315 0.00001
NM_032444.4(SLX4):c.5081C>T (p.Ala1694Val) rs761226343 0.00001
NM_058216.3(RAD51C):c.1097G>A (p.Arg366Gln) rs577852020 0.00001
NM_058216.3(RAD51C):c.154A>C (p.Ile52Leu) rs730881927 0.00001
NM_000136.3(FANCC):c.996+1056C>A rs879559
NM_000322.5(PRPH2):c.582-58A>C rs3818087
NM_024675.3(PALB2):c.-200-27T>G rs515726055
NM_024675.4(PALB2):c.-104C>T rs1597102015
NM_024675.4(PALB2):c.-145G>C rs373698818
NM_024675.4(PALB2):c.-46G>A rs180177141
NM_024675.4(PALB2):c.-98C>A rs515726058
NM_024675.4(PALB2):c.108+59C>G rs515726061
NM_024675.4(PALB2):c.1285A>G (p.Ile429Val) rs1555461360
NM_024675.4(PALB2):c.1376A>G (p.Asp459Gly) rs1031787378
NM_024675.4(PALB2):c.1468C>T (p.Pro490Ser) rs878855101
NM_024675.4(PALB2):c.1646A>G (p.His549Arg) rs1597095334
NM_024675.4(PALB2):c.1656G>A (p.Gln552=) rs180177104
NM_024675.4(PALB2):c.1684+18TGA[7] rs368593832
NM_024675.4(PALB2):c.1684+18TGA[9] rs368593832
NM_024675.4(PALB2):c.1684+42_1684+43insATG rs180177106
NM_024675.4(PALB2):c.1685-58C>A rs180177108
NM_024675.4(PALB2):c.1685-70T>G rs180177109
NM_024675.4(PALB2):c.1881G>T (p.Val627=) rs139362268
NM_024675.4(PALB2):c.2093T>C (p.Leu698Pro) rs1966860685
NM_024675.4(PALB2):c.212-180T>G rs515726076
NM_024675.4(PALB2):c.212-25T>A rs515726077
NM_024675.4(PALB2):c.212-25_212-24insTA rs515726078
NM_024675.4(PALB2):c.2205A>G (p.Pro735=) rs515726082
NM_024675.4(PALB2):c.2275C>A (p.Gln759Lys) rs515726083
NM_024675.4(PALB2):c.2301C>A (p.Val767=) rs515726084
NM_024675.4(PALB2):c.2469C>A (p.Leu823=) rs515726087
NM_024675.4(PALB2):c.2586+31T>G rs180177117
NM_024675.4(PALB2):c.2587-37G>C rs180177118
NM_024675.4(PALB2):c.2587-59T>C rs371085248
NM_024675.4(PALB2):c.2661C>A (p.Ile887=) rs180177120
NM_024675.4(PALB2):c.26T>A (p.Leu9His) rs515726092
NM_024675.4(PALB2):c.2823C>A (p.Ile941=) rs515726095
NM_024675.4(PALB2):c.2834+12C>T rs515726096
NM_024675.4(PALB2):c.2834+20T>G rs515726097
NM_024675.4(PALB2):c.2996+58T>C rs180177129
NM_024675.4(PALB2):c.3049G>A (p.Ala1017Thr) rs759795184
NM_024675.4(PALB2):c.3053A>C (p.Glu1018Ala) rs1567212910
NM_024675.4(PALB2):c.3094A>T (p.Met1032Leu) rs1555459367
NM_024675.4(PALB2):c.3201+115T>C rs515726110
NM_024675.4(PALB2):c.3321G>A (p.Leu1107=) rs515726113
NM_024675.4(PALB2):c.3500C>T (p.Thr1167Ile) rs1308784980
NM_024675.4(PALB2):c.3504C>G (p.Asp1168Glu) rs1966396729
NM_024675.4(PALB2):c.49-173G>T rs515726120
NM_024675.4(PALB2):c.49-54C>T rs515726121
NM_024675.4(PALB2):c.618T>G (p.Leu206=) rs180177088
NM_032444.4(SLX4):c.1132C>A (p.Pro378Thr) rs758572814
NM_032444.4(SLX4):c.1163+10C>T rs80116508
NM_032444.4(SLX4):c.1164C>G (p.Ser388Arg) rs764619389
NM_032444.4(SLX4):c.1513G>A (p.Ala505Thr) rs2040676569
NM_032444.4(SLX4):c.1517G>A (p.Ser506Asn) rs765859186
NM_032444.4(SLX4):c.1924+5G>A rs756633703
NM_032444.4(SLX4):c.1925-106T>G rs1309802144
NM_032444.4(SLX4):c.1925-122C>T rs2040646025
NM_032444.4(SLX4):c.2013+130C>G rs2040640910
NM_032444.4(SLX4):c.2328-48_2328-36del rs2040593649
NM_032444.4(SLX4):c.2854_2855delinsAT (p.Ala952Met) rs863224277
NM_032444.4(SLX4):c.3860T>G (p.Val1287Gly) rs1596520811
NM_032444.4(SLX4):c.421G>T (p.Gly141Trp) rs137976282
NM_032444.4(SLX4):c.4637-210A>G rs2040492620
NM_032444.4(SLX4):c.4739+31G>A rs750697497
NM_032444.4(SLX4):c.4739+79G>A rs74762428
NM_032444.4(SLX4):c.4739+90C>G rs2040487330
NM_032444.4(SLX4):c.5440C>T (p.Arg1814Cys) rs767720336
NM_032444.4(SLX4):c.851A>G (p.His284Arg) rs778405275
NM_032444.4(SLX4):c.950+29C>T rs757789193
NM_058216.3(RAD51C):c.237T>G (p.Ser79=) rs1555593575
NM_058216.3(RAD51C):c.475G>A (p.Asp159Asn) rs775213492
NM_058216.3(RAD51C):c.791G>T (p.Gly264Val) rs1283065191
NM_058216.3(RAD51C):c.87T>C (p.Ser29=) rs786203249

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