Variants with conflicting interpretations studied for Colorectal cancer, susceptibility to

Minimum review status of the submission for Colorectal cancer, susceptibility to:		Collection method of the submission for Colorectal cancer, susceptibility to:
Minimum review status of the other submission:		Collection method of the other submission:
Minimum conflict level: Report conflict between different conditions
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition	Variants with at least 2 submissions on the same condition and no conflicts	Variants with a synonymous conflict (e.g. benign vs non-pathogenic)	Variants with a confidence conflict (e.g. benign vs likely benign)	Variants with a benign or likely benign vs uncertain conflict	Variants with a category conflict (e.g. benign vs affects)	Variants with a clinically significant conflict (e.g. benign vs pathogenic)	Variants with any conflict
7	3	0	1	5	2	3	10

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

	All conditions
Colorectal cancer, susceptibility to		pathogenic	likely pathogenic	uncertain significance	likely benign	benign	established risk allele
	pathogenic	0	0	3	0	0	0
	uncertain significance	0	0	0	4	2	0
	likely benign	0	0	1	0	1	0
	risk factor	1	1	1	0	2	1

Condition to condition summary #

Total conditions: 5

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Condition	Variants with at least 2 submissions on the same condition and no conflicts	Variants with a confidence conflict (e.g. benign vs likely benign)	Variants with a benign or likely benign vs uncertain conflict	Variants with a category conflict (e.g. benign vs affects)	Variants with a clinically significant conflict (e.g. benign vs pathogenic)	Variants with any conflict
not provided	4	0	4	2	3	9
not specified	2	1	3	1	0	5
APC-related condition	1	0	1	0	0	1
CCND1-related condition	0	0	0	1	0	1
Neoplasm of the liver	0	0	1	0	0	1

All variants with conflicting interpretations #

Total variants: 10

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HGVS	dbSNP	gnomAD frequency
NM_053056.3(CCND1):c.723G>A (p.Pro241=)	rs9344	0.38311
NM_000038.6(APC):c.3920T>A (p.Ile1307Lys)	rs1801155	0.00116
NM_000038.6(APC):c.295C>T (p.Arg99Trp)	rs139196838	0.00048
NM_000038.6(APC):c.2204C>T (p.Ala735Val)	rs147655929	0.00012
NM_000038.6(APC):c.5801C>T (p.Pro1934Leu)	rs587780600	0.00012
NM_000038.6(APC):c.6679G>T (p.Gly2227Cys)	rs367905430	0.00008
NM_000038.6(APC):c.4073C>T (p.Ala1358Val)	rs730881249	0.00004
NM_000038.6(APC):c.2805C>A (p.Tyr935Ter)	rs137854575
NM_000038.6(APC):c.562C>T (p.Gln188Ter)	rs869312753
NM_000038.6(APC):c.904C>T (p.Arg302Ter)	rs137854568

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