ClinVar Miner

Variants with conflicting interpretations studied for PITX2-Related Eye Abnormalities

Coded as:
Minimum review status of the submission for PITX2-Related Eye Abnormalities: Collection method of the submission for PITX2-Related Eye Abnormalities:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
2 37 0 12 12 0 1 24

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All conditions
PITX2-Related Eye Abnormalities pathogenic uncertain significance likely benign benign
uncertain significance 0 0 0 1
benign 1 11 12 0

Condition to condition summary #

Total conditions: 3
Download table as spreadsheet
Condition Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
Hypoplasia of the iris 0 41 0 9 11 0 0 20
not provided 0 2 0 4 2 0 1 7
PITX2-related condition 0 0 0 0 1 0 0 1

All variants with conflicting interpretations #

Total variants: 24
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_000325.6(PITX2):c.*454C>T rs6533526 0.05143
NM_000325.6(PITX2):c.*471G>A rs75911264 0.01337
NM_153427.2(PITX2):c.-392G>T rs113778706 0.01298
NM_000325.6(PITX2):c.618T>G (p.Ser206=) rs35946364 0.01175
NM_153427.3(PITX2):c.46+8C>G rs199896960 0.01041
NM_153427.3(PITX2):c.-211G>A rs111733107 0.00270
NM_000325.6(PITX2):c.562G>A (p.Ala188Thr) rs77144743 0.00264
NM_153427.2(PITX2):c.-362C>G rs181197472 0.00251
NM_153427.2(PITX2):c.-1024G>A rs181439547 0.00231
NM_153427.2(PITX2):c.-1111C>G rs187210297 0.00231
NM_153427.2(PITX2):c.-1335C>A rs145638916 0.00177
NM_153427.2(PITX2):c.-793C>A rs145044365 0.00165
NM_000325.6(PITX2):c.819G>A (p.Pro273=) rs148191851 0.00135
NM_000325.6(PITX2):c.862C>T (p.Leu288=) rs139401187 0.00035
NM_153427.2(PITX2):c.-1311G>T rs192250966 0.00030
NM_000325.6(PITX2):c.639A>T (p.Ser213=) rs141176394 0.00029
NM_153427.2(PITX2):c.-967C>T rs368647502 0.00024
NM_000325.6(PITX2):c.619A>G (p.Met207Val) rs138163892 0.00023
NM_153427.3(PITX2):c.-79G>A rs535056127 0.00012
NM_001204398.1(PITX2):c.-11+12T>C rs140614517 0.00009
NM_000325.6(PITX2):c.*340A>G rs551209662
NM_000325.6(PITX2):c.224A>C (p.Gln75Pro) rs201628949
NM_153427.2(PITX2):c.-1532C>A rs117231596
NM_153427.2(PITX2):c.-429C>G rs985015612

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