ClinVar Miner

Variants with conflicting interpretations studied for Pyogenic arthritis, pyoderma gangrenosum and acne

Coded as:
Minimum review status of the submission for Pyogenic arthritis, pyoderma gangrenosum and acne: Y axis collection method of the submission for Pyogenic arthritis, pyoderma gangrenosum and acne:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
53 14 0 18 7 0 2 26

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All conditions
Pyogenic arthritis, pyoderma gangrenosum and acne pathogenic uncertain significance likely benign benign
uncertain significance 1 0 5 0
likely benign 1 4 0 17
benign 0 2 16 0

Condition to condition summary #

Total conditions: 4
Download table as spreadsheet
Condition Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Pyogenic arthritis, pyoderma gangrenosum and acne 70 5 0 15 3 0 0 18
not specified 0 10 0 12 5 0 0 17
not provided 0 5 0 10 1 0 0 11
Behcet's syndrome 0 0 0 0 0 0 2 2

All variants with conflicting interpretations #

Total variants: 26
Download table as spreadsheet
HGVS dbSNP
NM_003978.5(PSTPIP1):c.*38T>C rs201535027
NM_003978.5(PSTPIP1):c.1098G>A (p.Ala366=) rs35538044
NM_003978.5(PSTPIP1):c.1112C>T (p.Thr371Ile) rs34908107
NM_003978.5(PSTPIP1):c.1143C>T (p.Ser381=) rs141227274
NM_003978.5(PSTPIP1):c.1144G>A (p.Ala382Thr) rs145344175
NM_003978.5(PSTPIP1):c.1151A>G (p.Asp384Gly) rs200771233
NM_003978.5(PSTPIP1):c.1207G>C (p.Gly403Arg) rs369113632
NM_003978.5(PSTPIP1):c.1213C>T (p.Arg405Cys) rs201253322
NM_003978.5(PSTPIP1):c.147G>A (p.Ala49=) rs34618738
NM_003978.5(PSTPIP1):c.203C>T (p.Thr68Met) rs201872851
NM_003978.5(PSTPIP1):c.236C>T (p.Ser79Phe) rs77026017
NM_003978.5(PSTPIP1):c.354+10G>A rs370745407
NM_003978.5(PSTPIP1):c.364G>A (p.Val122Ile) rs886041107
NM_003978.5(PSTPIP1):c.543G>A (p.Lys181=) rs375950478
NM_003978.5(PSTPIP1):c.555C>T (p.Thr185=) rs370782742
NM_003978.5(PSTPIP1):c.59C>T (p.Thr20Met) rs553718554
NM_003978.5(PSTPIP1):c.652C>T (p.Leu218=) rs35677716
NM_003978.5(PSTPIP1):c.657A>C (p.Gln219His) rs139362350
NM_003978.5(PSTPIP1):c.657A>G (p.Gln219=) rs139362350
NM_003978.5(PSTPIP1):c.687C>T (p.Asn229=) rs542286074
NM_003978.5(PSTPIP1):c.773G>C (p.Gly258Ala) rs34240327
NM_003978.5(PSTPIP1):c.786C>T (p.Asp262=) rs35860563
NM_003978.5(PSTPIP1):c.837C>T (p.Pro279=) rs149195362
NM_003978.5(PSTPIP1):c.856A>G (p.Asn286Asp) rs377437961
NM_003978.5(PSTPIP1):c.908C>T (p.Pro303Leu) rs189773500
NM_003978.5(PSTPIP1):c.940C>T (p.Leu314=) rs201582038

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.