ClinVar Miner

Variants in gene ATL1 with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
155 18 6 7 8 0 1 19

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 6 3 0 0 0
likely pathogenic 3 0 1 0 0
uncertain significance 0 1 0 8 1
likely benign 0 0 8 0 4
benign 0 0 1 4 0

All variants with conflicting interpretations #

Total variants: 19
Download table as spreadsheet
HGVS dbSNP
NM_001127713.1(ATL1):c.1024C>G (p.Pro342Ala) rs1555365509
NM_001127713.1(ATL1):c.1152A>G (p.Pro384=) rs377127492
NM_001127713.1(ATL1):c.1160T>C (p.Leu387Ser) rs1595625010
NM_001127713.1(ATL1):c.1173C>T (p.His391=) rs149340140
NM_001127713.1(ATL1):c.1200G>A (p.Lys400=) rs144792471
NM_001127713.1(ATL1):c.1222A>G (p.Met408Val) rs28939094
NM_001127713.1(ATL1):c.1243C>T (p.Arg415Trp) rs119476050
NM_001127713.1(ATL1):c.1608T>G (p.Ala536=) rs777479928
NM_001127713.1(ATL1):c.322A>G (p.Thr108Ala) rs112496709
NM_001127713.1(ATL1):c.351G>A (p.Glu117=) rs1060197
NM_001127713.1(ATL1):c.467C>T (p.Thr156Ile) rs137852657
NM_001127713.1(ATL1):c.470T>G (p.Leu157Trp) rs119476051
NM_001127713.1(ATL1):c.631-7T>A rs186528086
NM_001127713.1(ATL1):c.669C>T (p.Tyr223=) rs146975855
NM_001127713.1(ATL1):c.715C>T (p.Arg239Cys) rs119476046
NM_001127713.1(ATL1):c.756C>T (p.Asn252=) rs771031586
NM_001127713.1(ATL1):c.773A>G (p.His258Arg) rs119476048
NM_001127713.1(ATL1):c.84A>G (p.Pro28=) rs35014209
NM_001127713.1(ATL1):c.969G>C (p.Arg323=) rs753145983

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