ClinVar Miner

Variants in gene CENPF with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
467 81 0 33 11 0 0 44

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 1 0 0 0
likely pathogenic 1 0 0 0 0
uncertain significance 0 0 0 9 2
likely benign 0 0 9 0 32
benign 0 0 2 32 0

All variants with conflicting interpretations #

Total variants: 44
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_016343.4(CENPF):c.9081C>T (p.Leu3027=) rs74557452 0.01439
NM_016343.4(CENPF):c.3123A>G (p.Gln1041=) rs76696551 0.01349
NM_016343.4(CENPF):c.3244C>T (p.His1082Tyr) rs61732031 0.01115
NM_016343.4(CENPF):c.5635C>T (p.Arg1879Cys) rs61732022 0.01110
NM_016343.4(CENPF):c.7506A>G (p.Ser2502=) rs76222303 0.01054
NM_016343.4(CENPF):c.6969A>G (p.Gln2323=) rs74825176 0.00972
NM_016343.4(CENPF):c.1243A>C (p.Ile415Leu) rs61999278 0.00821
NM_016343.4(CENPF):c.5924C>T (p.Thr1975Met) rs79313448 0.00789
NM_016343.4(CENPF):c.2673C>T (p.Asp891=) rs61732041 0.00477
NM_016343.4(CENPF):c.855G>A (p.Ala285=) rs114104425 0.00469
NM_016343.4(CENPF):c.6550G>A (p.Val2184Ile) rs62623663 0.00459
NM_016343.4(CENPF):c.7544A>C (p.Gln2515Pro) rs62636593 0.00459
NM_016343.4(CENPF):c.2271T>C (p.His757=) rs111676558 0.00364
NM_016343.4(CENPF):c.4470G>A (p.Leu1490=) rs112985127 0.00364
NM_016343.4(CENPF):c.4182A>G (p.Thr1394=) rs150367049 0.00354
NM_016343.4(CENPF):c.5891G>A (p.Arg1964His) rs78580151 0.00342
NM_016343.4(CENPF):c.6113A>C (p.Gln2038Pro) rs142561288 0.00337
NM_016343.4(CENPF):c.6433C>T (p.Arg2145Cys) rs114218080 0.00305
NM_016343.4(CENPF):c.7555A>G (p.Lys2519Glu) rs149416779 0.00289
NM_016343.4(CENPF):c.3811A>G (p.Lys1271Glu) rs62000407 0.00238
NM_016343.4(CENPF):c.4289C>G (p.Ser1430Cys) rs76231205 0.00237
NM_016343.4(CENPF):c.1055A>G (p.Gln352Arg) rs6697155 0.00207
NM_016343.4(CENPF):c.3617A>G (p.Tyr1206Cys) rs144237457 0.00181
NM_016343.4(CENPF):c.1447-4T>C rs151249612 0.00165
NM_016343.4(CENPF):c.1257C>G (p.Ala419=) rs149792761 0.00150
NM_016343.4(CENPF):c.1218T>G (p.Ser406=) rs139919911 0.00149
NM_016343.4(CENPF):c.4313A>G (p.Tyr1438Cys) rs142984971 0.00101
NM_016343.4(CENPF):c.8736A>C (p.Pro2912=) rs140887866 0.00100
NM_016343.4(CENPF):c.4520C>T (p.Ser1507Phe) rs145589304 0.00085
NM_016343.4(CENPF):c.6776A>C (p.Glu2259Ala) rs144478326 0.00069
NM_016343.4(CENPF):c.5862A>G (p.Ser1954=) rs150348132 0.00043
NM_016343.4(CENPF):c.1398G>A (p.Ala466=) rs139822426 0.00037
NM_016343.4(CENPF):c.6668A>G (p.Gln2223Arg) rs150277836 0.00034
NM_016343.4(CENPF):c.2595A>C (p.Glu865Asp) rs142993088 0.00032
NM_016343.4(CENPF):c.4582T>C (p.Cys1528Arg) rs141472136 0.00031
NM_016343.4(CENPF):c.7721C>T (p.Ser2574Phe) rs201477597 0.00022
NM_016343.4(CENPF):c.3352C>G (p.Gln1118Glu) rs200341117 0.00019
NM_016343.4(CENPF):c.6826T>G (p.Cys2276Gly) rs141620633 0.00014
NM_016343.4(CENPF):c.3307T>C (p.Leu1103=) rs547374269 0.00001
NM_016343.4(CENPF):c.3369C>T (p.Ser1123=) rs369791107 0.00001
NM_016343.4(CENPF):c.9280C>T (p.Arg3094Ter) rs869312748 0.00001
NM_016343.4(CENPF):c.1068+15G>A rs117507465
NM_016343.4(CENPF):c.2101A>C (p.Met701Leu) rs3795524
NM_016343.4(CENPF):c.8963-9dup rs575514285

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