ClinVar Miner

Variants in gene combination HRAS, LRRC56 with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
580 49 0 23 8 0 2 30

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 7 1 0 0
likely pathogenic 7 0 1 0 0
uncertain significance 1 1 0 6 4
likely benign 0 0 6 0 16
benign 0 0 4 16 0

All variants with conflicting interpretations #

Total variants: 30
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_005343.4(HRAS):c.81T>C (p.His27=) rs12628 0.34645
NM_005343.4(HRAS):c.477G>A (p.Leu159=) rs140060409 0.00222
NM_005343.4(HRAS):c.357C>T (p.Asp119=) rs111352454 0.00121
NM_005343.4(HRAS):c.257A>C (p.Asn86Thr) rs138272051 0.00019
NM_005343.4(HRAS):c.330C>T (p.Pro110=) rs200747280 0.00011
NM_005343.4(HRAS):c.177C>T (p.Ala59=) rs730880456 0.00010
NM_005343.4(HRAS):c.369C>T (p.Arg123=) rs200945755 0.00006
NM_005343.4(HRAS):c.222C>T (p.Thr74=) rs372223975 0.00005
NM_005343.4(HRAS):c.363T>C (p.Ala121=) rs146440188 0.00004
NM_005343.4(HRAS):c.36C>T (p.Gly12=) rs727504424 0.00004
NM_005343.4(HRAS):c.520C>T (p.Pro174Ser) rs397517144 0.00004
NM_005343.4(HRAS):c.412G>A (p.Gly138Ser) rs397517142 0.00003
NM_005343.4(HRAS):c.54G>A (p.Ala18=) rs148380285 0.00003
NM_005343.4(HRAS):c.*1C>T rs730880327 0.00002
NM_005343.4(HRAS):c.378A>G (p.Glu126=) rs397517140 0.00001
NM_005343.4(HRAS):c.510G>A (p.Lys170=) rs397517143 0.00001
NM_005343.4(HRAS):c.102C>G (p.Pro34=) rs149199691
NM_005343.4(HRAS):c.175G>A (p.Ala59Thr) rs727503093
NM_005343.4(HRAS):c.21G>C (p.Val7=)
NM_005343.4(HRAS):c.291-6T>G rs766909143
NM_005343.4(HRAS):c.34G>A (p.Gly12Ser) rs104894229
NM_005343.4(HRAS):c.34G>T (p.Gly12Cys) rs104894229
NM_005343.4(HRAS):c.35G>C (p.Gly12Ala) rs104894230
NM_005343.4(HRAS):c.37G>C (p.Gly13Arg) rs104894228
NM_005343.4(HRAS):c.37G>T (p.Gly13Cys) rs104894228
NM_005343.4(HRAS):c.386A>G (p.Gln129Arg) rs1851242529
NM_005343.4(HRAS):c.388G>C (p.Ala130Pro) rs1564788957
NM_005343.4(HRAS):c.437C>T (p.Ala146Val) rs121917759
NM_176795.5(HRAS):c.488_497del (p.Leu163fs) rs764755556
NM_176795.5(HRAS):c.488_507del (p.Leu163fs) rs776060230

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