ClinVar Miner

Variants in gene HSPG2 with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
727 103 0 43 41 0 0 78

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

uncertain significance likely benign benign
uncertain significance 0 34 13
likely benign 34 0 43
benign 13 43 0

All variants with conflicting interpretations #

Total variants: 78
Download table as spreadsheet
HGVS dbSNP
NM_005529.7(HSPG2):c.10045C>G (p.Leu3349Val) rs75843082
NM_005529.7(HSPG2):c.10110G>A (p.Lys3370=) rs141963344
NM_005529.7(HSPG2):c.10204G>C (p.Val3402Leu) rs150666616
NM_005529.7(HSPG2):c.10280G>A (p.Arg3427Gln) rs142939330
NM_005529.7(HSPG2):c.10498G>A (p.Val3500Met) rs143543800
NM_005529.7(HSPG2):c.10512C>T (p.His3504=) rs55875654
NM_005529.7(HSPG2):c.10677C>T (p.Asn3559=) rs138049720
NM_005529.7(HSPG2):c.10702G>A (p.Val3568Ile) rs115616224
NM_005529.7(HSPG2):c.1082C>A (p.Thr361Asn) rs75467696
NM_005529.7(HSPG2):c.1086G>A (p.Lys362=) rs189837148
NM_005529.7(HSPG2):c.10937G>A (p.Arg3646His) rs112062179
NM_005529.7(HSPG2):c.11072C>T (p.Thr3691Ile) rs149159881
NM_005529.7(HSPG2):c.11169C>T (p.Phe3723=) rs139033413
NM_005529.7(HSPG2):c.11475C>T (p.Ile3825=) rs111866498
NM_005529.7(HSPG2):c.11671+5G>A rs77527456
NM_005529.7(HSPG2):c.11717G>A (p.Arg3906Gln) rs78944354
NM_005529.7(HSPG2):c.11827G>A (p.Ala3943Thr) rs116630187
NM_005529.7(HSPG2):c.12004C>G (p.Leu4002Val) rs140403186
NM_005529.7(HSPG2):c.12072C>T (p.Asp4024=) rs146167897
NM_005529.7(HSPG2):c.1238G>A (p.Arg413Gln) rs140621959
NM_005529.7(HSPG2):c.149A>T (p.His50Leu) rs138518139
NM_005529.7(HSPG2):c.1959A>C (p.Gln653His) rs62642535
NM_005529.7(HSPG2):c.1998+9C>T rs377228309
NM_005529.7(HSPG2):c.204C>A (p.Asp68Glu) rs1869780
NM_005529.7(HSPG2):c.2074G>A (p.Val692Met) rs143669458
NM_005529.7(HSPG2):c.2326G>A (p.Val776Met) rs145476116
NM_005529.7(HSPG2):c.2357A>G (p.Asn786Ser) rs143736974
NM_005529.7(HSPG2):c.2462C>T (p.Ala821Val) rs141901178
NM_005529.7(HSPG2):c.2558+10A>G rs756733330
NM_005529.7(HSPG2):c.2847G>A (p.Glu949=) rs773662857
NM_005529.7(HSPG2):c.2850T>C (p.Pro950=) rs115322282
NM_005529.7(HSPG2):c.3056C>T (p.Pro1019Leu) rs62642528
NM_005529.7(HSPG2):c.3269G>A (p.Arg1090Gln) rs78889849
NM_005529.7(HSPG2):c.3707C>A (p.Ala1236Glu) rs113652076
NM_005529.7(HSPG2):c.3747C>T (p.Cys1249=) rs886042933
NM_005529.7(HSPG2):c.3794-3C>A rs141000672
NM_005529.7(HSPG2):c.3847G>A (p.Val1283Ile) rs62642527
NM_005529.7(HSPG2):c.4132G>A (p.Glu1378Lys) rs62642525
NM_005529.7(HSPG2):c.4413C>T (p.Pro1471=) rs376929779
NM_005529.7(HSPG2):c.4488G>A (p.Thr1496=) rs372318754
NM_005529.7(HSPG2):c.4568G>A (p.Arg1523His) rs147633715
NM_005529.7(HSPG2):c.4601C>G (p.Pro1534Arg) rs142736845
NM_005529.7(HSPG2):c.4877G>A (p.Arg1626His) rs41311989
NM_005529.7(HSPG2):c.4916C>T (p.Thr1639Met) rs142433309
NM_005529.7(HSPG2):c.4971C>T (p.Tyr1657=) rs138459752
NM_005529.7(HSPG2):c.5075G>T (p.Gly1692Val) rs777795072
NM_005529.7(HSPG2):c.5191C>T (p.Leu1731Phe) rs201491948
NM_005529.7(HSPG2):c.5297C>T (p.Ala1766Val) rs139794766
NM_005529.7(HSPG2):c.5433C>T (p.Asn1811=) rs140134749
NM_005529.7(HSPG2):c.5756G>A (p.Arg1919His) rs62642521
NM_005529.7(HSPG2):c.5934G>A (p.Arg1978=) rs557762861
NM_005529.7(HSPG2):c.6141T>C (p.Asp2047=) rs150129885
NM_005529.7(HSPG2):c.6541G>A (p.Ala2181Thr) rs143109401
NM_005529.7(HSPG2):c.6927C>T (p.Tyr2309=) rs552716935
NM_005529.7(HSPG2):c.7026C>T (p.Pro2342=) rs182418174
NM_005529.7(HSPG2):c.7086C>T (p.Cys2362=) rs139001173
NM_005529.7(HSPG2):c.7096G>A (p.Gly2366Arg) rs140476180
NM_005529.7(HSPG2):c.7235G>A (p.Ser2412Asn) rs146309392
NM_005529.7(HSPG2):c.732A>G (p.Thr244=) rs139842104
NM_005529.7(HSPG2):c.7438C>T (p.Arg2480Trp) rs143437991
NM_005529.7(HSPG2):c.7511G>A (p.Arg2504His) rs62642517
NM_005529.7(HSPG2):c.769C>T (p.Arg257Trp) rs535956121
NM_005529.7(HSPG2):c.7826G>A (p.Arg2609Gln) rs147286334
NM_005529.7(HSPG2):c.8044C>T (p.Arg2682Trp) rs142458572
NM_005529.7(HSPG2):c.8199A>G (p.Ser2733=) rs886044168
NM_005529.7(HSPG2):c.8325C>T (p.Gly2775=) rs142011049
NM_005529.7(HSPG2):c.8381G>A (p.Arg2794Gln) rs141563188
NM_005529.7(HSPG2):c.8545G>T (p.Val2849Leu) rs147114700
NM_005529.7(HSPG2):c.8554G>A (p.Gly2852Arg) rs199942544
NM_005529.7(HSPG2):c.8605G>C (p.Ala2869Pro) rs139838884
NM_005529.7(HSPG2):c.8941G>A (p.Val2981Ile) rs2229490
NM_005529.7(HSPG2):c.8961C>T (p.Gly2987=) rs369899077
NM_005529.7(HSPG2):c.9060G>A (p.Arg3020=) rs372508479
NM_005529.7(HSPG2):c.9291C>T (p.Tyr3097=) rs534949106
NM_005529.7(HSPG2):c.9327C>T (p.His3109=) rs61743674
NM_005529.7(HSPG2):c.9564G>C (p.Gln3188His) rs149644947
NM_005529.7(HSPG2):c.958+14G>A rs200930800
NM_005529.7(HSPG2):c.9719C>T (p.Ala3240Val) rs62642505

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