ClinVar Miner

Variants in gene LAMA4 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
404 103 0 45 36 0 1 76

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic uncertain significance likely benign benign
pathogenic 0 1 0 0
uncertain significance 1 0 33 9
likely benign 0 33 0 45
benign 0 9 45 0

All variants with conflicting interpretations #

Total variants: 76
Download table as spreadsheet
HGVS dbSNP
NM_001105206.3(LAMA4):c.*1C>T rs148811960
NM_001105206.3(LAMA4):c.1020C>T (p.Asn340=) rs147822567
NM_001105206.3(LAMA4):c.1035G>A (p.Thr345=) rs147069572
NM_001105206.3(LAMA4):c.1140C>T (p.His380=) rs782378476
NM_001105206.3(LAMA4):c.1158G>A (p.Glu386=) rs147894075
NM_001105206.3(LAMA4):c.1190-8C>G rs73538515
NM_001105206.3(LAMA4):c.122C>T (p.Ala41Val) rs553474007
NM_001105206.3(LAMA4):c.1277T>C (p.Met426Thr) rs200112094
NM_001105206.3(LAMA4):c.1326C>T (p.Leu442=) rs3752580
NM_001105206.3(LAMA4):c.141G>A (p.Pro47=) rs141926228
NM_001105206.3(LAMA4):c.1475T>A (p.Leu492His) rs3752579
NM_001105206.3(LAMA4):c.1551+4C>T rs201209516
NM_001105206.3(LAMA4):c.1614G>A (p.Ala538=) rs143587921
NM_001105206.3(LAMA4):c.1647A>C (p.Ser549=) rs149459643
NM_001105206.3(LAMA4):c.1668+9G>A rs201457182
NM_001105206.3(LAMA4):c.1669-7del rs531072297
NM_001105206.3(LAMA4):c.1821G>A (p.Lys607=) rs374481199
NM_001105206.3(LAMA4):c.195+144T>C rs147118520
NM_001105206.3(LAMA4):c.1959T>C (p.Asp653=) rs143269044
NM_001105206.3(LAMA4):c.196-12T>C rs78871662
NM_001105206.3(LAMA4):c.196-15G>C rs371906362
NM_001105206.3(LAMA4):c.196-9C>T rs144850734
NM_001105206.3(LAMA4):c.1960-3T>C rs373682270
NM_001105206.3(LAMA4):c.1962G>A (p.Ala654=) rs140246538
NM_001105206.3(LAMA4):c.1999G>T (p.Asp667Tyr) rs397516720
NM_001105206.3(LAMA4):c.2090G>A (p.Arg697His) rs397516723
NM_001105206.3(LAMA4):c.2171G>A (p.Arg724Lys) rs146868519
NM_001105206.3(LAMA4):c.2226C>T (p.Asn742=) rs530906240
NM_001105206.3(LAMA4):c.2250G>A (p.Gln750=) rs112305543
NM_001105206.3(LAMA4):c.228G>A (p.Ser76=) rs200589775
NM_001105206.3(LAMA4):c.2398C>T (p.Arg800Cys) rs202184174
NM_001105206.3(LAMA4):c.2403G>A (p.Thr801=) rs142559688
NM_001105206.3(LAMA4):c.2493+15G>T rs77901141
NM_001105206.3(LAMA4):c.254A>G (p.Asn85Ser) rs145301300
NM_001105206.3(LAMA4):c.2569G>A (p.Ala857Thr) rs144123257
NM_001105206.3(LAMA4):c.2614C>G (p.Pro872Ala) rs180931319
NM_001105206.3(LAMA4):c.264C>T (p.Ser88=) rs201152817
NM_001105206.3(LAMA4):c.2655C>T (p.Leu885=) rs35772073
NM_001105206.3(LAMA4):c.2810A>G (p.Glu937Gly) rs35605307
NM_001105206.3(LAMA4):c.297+8G>A rs200595773
NM_001105206.3(LAMA4):c.3054G>T (p.Leu1018Phe) rs183262122
NM_001105206.3(LAMA4):c.3055T>C (p.Tyr1019His) rs73532636
NM_001105206.3(LAMA4):c.3165C>T (p.Ser1055=) rs782303510
NM_001105206.3(LAMA4):c.3175G>A (p.Val1059Met) rs373650093
NM_001105206.3(LAMA4):c.3238C>T (p.Arg1080Ter) rs372615994
NM_001105206.3(LAMA4):c.3239G>A (p.Arg1080Gln) rs41289902
NM_001105206.3(LAMA4):c.343G>A (p.Asp115Asn) rs781919095
NM_001105206.3(LAMA4):c.3558-7T>C rs200864778
NM_001105206.3(LAMA4):c.3742A>G (p.Ile1248Val) rs547323858
NM_001105206.3(LAMA4):c.3834G>A (p.Gly1278=) rs141988342
NM_001105206.3(LAMA4):c.3943G>A (p.Val1315Ile) rs70940811
NM_001105206.3(LAMA4):c.4065C>T (p.Phe1355=) rs34753919
NM_001105206.3(LAMA4):c.4173T>C (p.Tyr1391=) rs35042032
NM_001105206.3(LAMA4):c.4436G>A (p.Arg1479His) rs140346737
NM_001105206.3(LAMA4):c.456T>A (p.Ala152=) rs149106800
NM_001105206.3(LAMA4):c.4665+15G>A rs377415750
NM_001105206.3(LAMA4):c.4665+8G>T rs184220860
NM_001105206.3(LAMA4):c.4678C>A (p.Arg1560=) rs150069819
NM_001105206.3(LAMA4):c.4822-3C>T rs191447048
NM_001105206.3(LAMA4):c.4852C>T (p.Leu1618Phe) rs397516733
NM_001105206.3(LAMA4):c.486T>C (p.Ala162=) rs397516734
NM_001105206.3(LAMA4):c.5016T>A (p.Ile1672=) rs148517180
NM_001105206.3(LAMA4):c.514G>A (p.Gly172Ser) rs147695488
NM_001105206.3(LAMA4):c.5207-14G>C rs112265545
NM_001105206.3(LAMA4):c.5270C>T (p.Pro1757Leu) rs200177134
NM_001105206.3(LAMA4):c.5340A>G (p.Thr1780=) rs139241892
NM_001105206.3(LAMA4):c.5344C>T (p.Arg1782Cys) rs145897390
NM_001105206.3(LAMA4):c.5444dup (p.Ser1816fs) rs782327744
NM_001105206.3(LAMA4):c.5450T>C (p.Ile1817Thr) rs144482486
NM_001105206.3(LAMA4):c.572G>A (p.Gly191Glu) rs782010849
NM_001105206.3(LAMA4):c.641G>A (p.Arg214His) rs139146419
NM_001105206.3(LAMA4):c.668G>A (p.Arg223His) rs200017155
NM_001105206.3(LAMA4):c.85G>C (p.Asp29His) rs150662822
NM_001105206.3(LAMA4):c.863C>G (p.Ala288Gly) rs150084275
NM_001105206.3(LAMA4):c.888C>T (p.Ser296=) rs17073495
NM_001105206.3(LAMA4):c.924T>C (p.His308=) rs143580603

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