ClinVar Miner

Variants in gene LIFR with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
374 14 0 8 9 0 0 15

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 1 0 0 0
likely pathogenic 1 0 0 0 0
uncertain significance 0 0 0 7 3
likely benign 0 0 7 0 7
benign 0 0 3 7 0

All variants with conflicting interpretations #

Total variants: 15
Download table as spreadsheet
HGVS dbSNP
NM_001127671.2(LIFR):c.143-37GT[11] rs10637374
NM_001127671.2(LIFR):c.143-37GT[13] rs10637374
NM_001127671.2(LIFR):c.1937C>A (p.Thr646Asn) rs79040751
NM_001127671.2(LIFR):c.2074C>T (p.Arg692Ter) rs199775294
NM_001127671.2(LIFR):c.2302A>G (p.Arg768Gly) rs139848756
NM_001127671.2(LIFR):c.2447A>G (p.Asp816Gly) rs74856317
NM_001127671.2(LIFR):c.2498-7G>A rs113078097
NM_001127671.2(LIFR):c.2670+6C>G rs898718526
NM_001127671.2(LIFR):c.2934G>A (p.Gln978=) rs148354076
NM_001127671.2(LIFR):c.2937G>A (p.Ser979=) rs201711670
NM_001127671.2(LIFR):c.3060G>A (p.Glu1020=) rs537706381
NM_001127671.2(LIFR):c.364A>G (p.Thr122Ala) rs145163157
NM_001127671.2(LIFR):c.420G>A (p.Glu140=) rs142475175
NM_001127671.2(LIFR):c.670A>G (p.Ile224Val) rs151282774
NM_001127671.2(LIFR):c.954C>T (p.Thr318=) rs61748202

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