Variants in gene NOD2 with conflicting interpretations

Y axis minimum submission review status:		Y axis collection method:
X axis minimum submission review status:		X axis collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition	Variants with at least 2 submissions on the same condition and no conflicts	Variants with a synonymous conflict (e.g. benign vs non-pathogenic)	Variants with a confidence conflict (e.g. benign vs likely benign)	Variants with a benign or likely benign vs uncertain conflict	Variants with a category conflict (e.g. benign vs affects)	Variants with a clinically significant conflict (e.g. benign vs pathogenic)	Variants with any conflict
442	33	0	1	12	3	0	14

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

	uncertain significance	likely benign	benign	risk factor
uncertain significance	0	10	2	2
likely benign	10	0	1	2
benign	2	1	0	0
risk factor	2	2	0	0

All variants with conflicting interpretations #

Total variants: 14

Download table as spreadsheet

HGVS	dbSNP
NM_001370466.1(NOD2):c.-8-7T>A	rs104895421
NM_001370466.1(NOD2):c.1200G>A (p.Pro400=)	rs104895430
NM_001370466.1(NOD2):c.1753G>A (p.Ala585Thr)	rs104895438
NM_001370466.1(NOD2):c.2023C>T (p.Arg675Trp)	rs2066844
NM_001370466.1(NOD2):c.2026C>T (p.Arg676Cys)	rs5743277
NM_001370466.1(NOD2):c.2183C>T (p.Ala728Val)	rs61747625
NM_001370466.1(NOD2):c.2291G>A (p.Arg764Gln)	rs104895464
NM_001370466.1(NOD2):c.2296G>A (p.Val766Met)	rs104895444
NM_001370466.1(NOD2):c.2641G>C (p.Gly881Arg)	rs2066845
NM_001370466.1(NOD2):c.2717+158C>T	rs5743289
NM_001370466.1(NOD2):c.2782G>A (p.Val928Ile)	rs5743291
NM_001370466.1(NOD2):c.2938dup (p.Leu980fs)	rs2066847
NM_001370466.1(NOD2):c.485C>T (p.Thr162Met)	rs61755182
NM_001370466.1(NOD2):c.850C>T (p.Arg284Trp)	rs104895427

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