ClinVar Miner

Variants in gene NOD2 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
359 39 0 7 12 4 0 19

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

uncertain significance likely benign benign risk factor
uncertain significance 0 9 4 3
likely benign 9 0 7 3
benign 4 7 0 1
risk factor 3 3 1 0

All variants with conflicting interpretations #

Total variants: 19
Download table as spreadsheet
HGVS dbSNP
NM_001370466.1(NOD2):c.-8-7T>A rs104895421
NM_001370466.1(NOD2):c.1200G>A (p.Pro400=) rs104895430
NM_001370466.1(NOD2):c.1235G>A (p.Arg412His) rs143110172
NM_001370466.1(NOD2):c.1372C>T (p.Leu458=) rs5743274
NM_001370466.1(NOD2):c.1753G>A (p.Ala585Thr) rs104895438
NM_001370466.1(NOD2):c.2023C>T (p.Arg675Trp) rs2066844
NM_001370466.1(NOD2):c.2026C>T (p.Arg676Cys) rs5743277
NM_001370466.1(NOD2):c.2057G>A (p.Arg686His) rs104895483
NM_001370466.1(NOD2):c.2288G>A (p.Arg763Gln) rs5743279
NM_001370466.1(NOD2):c.2296G>A (p.Val766Met) rs104895444
NM_001370466.1(NOD2):c.2474A>G (p.Asn825Ser) rs104895467
NM_001370466.1(NOD2):c.2490C>T (p.Asp830=) rs144083291
NM_001370466.1(NOD2):c.2641G>C (p.Gly881Arg) rs2066845
NM_001370466.1(NOD2):c.2782G>A (p.Val928Ile) rs5743291
NM_001370466.1(NOD2):c.2938dup (p.Leu980fs) rs2066847
NM_001370466.1(NOD2):c.485C>T (p.Thr162Met) rs61755182
NM_001370466.1(NOD2):c.486G>A (p.Thr162=) rs144887729
NM_001370466.1(NOD2):c.785A>G (p.Asn262Ser) rs5743271
NM_001370466.1(NOD2):c.850C>T (p.Arg284Trp) rs104895427

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