ClinVar Miner

Variants in gene PNKP with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
240 52 0 31 37 0 4 58

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 4 2 0 0
likely pathogenic 4 0 3 0 0
uncertain significance 2 3 0 30 20
likely benign 0 0 30 0 27
benign 0 0 20 27 0

All variants with conflicting interpretations #

Total variants: 58
Download table as spreadsheet
HGVS dbSNP
NM_007254.2(PNKP):c.603dupT rs796052859
NM_007254.3(PNKP):c.*15C>T rs1050332
NM_007254.3(PNKP):c.-50G>C rs3739166
NM_007254.3(PNKP):c.1009G>C (p.Glu337Gln) rs780121125
NM_007254.3(PNKP):c.1029+2T>C rs199919568
NM_007254.3(PNKP):c.1030-5C>T rs374745816
NM_007254.3(PNKP):c.1032G>A (p.Arg344=) rs185452809
NM_007254.3(PNKP):c.1123G>T (p.Gly375Trp) rs786203983
NM_007254.3(PNKP):c.1126+9C>T rs3739202
NM_007254.3(PNKP):c.1127-8C>T rs3739203
NM_007254.3(PNKP):c.1188+8delC rs763782151
NM_007254.3(PNKP):c.1189-10delG rs3739205
NM_007254.3(PNKP):c.1189-22_1189-19delTTGT rs368832563
NM_007254.3(PNKP):c.1221_1223delCAC (p.Thr408del) rs786205207
NM_007254.3(PNKP):c.1257C>T (p.Val419=) rs369003964
NM_007254.3(PNKP):c.1295_1298+6delCCAGGTAGCG rs587784366
NM_007254.3(PNKP):c.1298+6G>A rs578207030
NM_007254.3(PNKP):c.1299-6C>T rs112635688
NM_007254.3(PNKP):c.1302C>T (p.Tyr434=) rs747244348
NM_007254.3(PNKP):c.1320C>T (p.Ala440=) rs565533397
NM_007254.3(PNKP):c.1322C>G (p.Ala441Gly) rs549000007
NM_007254.3(PNKP):c.1385G>A (p.Arg462Gln) rs376854895
NM_007254.3(PNKP):c.1385G>C (p.Arg462Pro) rs376854895
NM_007254.3(PNKP):c.1387-11G>A rs200785744
NM_007254.3(PNKP):c.1387-3_1387-2delCA rs760066611
NM_007254.3(PNKP):c.1433T>G (p.Val478Gly) rs3739206
NM_007254.3(PNKP):c.1441G>A (p.Gly481Ser) rs146941866
NM_007254.3(PNKP):c.1491C>T (p.Ala497=) rs116192442
NM_007254.3(PNKP):c.1497G>A (p.Leu499=) rs142199280
NM_007254.3(PNKP):c.151+18T>G rs55756709
NM_007254.3(PNKP):c.1522G>A (p.Glu508Lys) rs146478958
NM_007254.3(PNKP):c.1557C>T (p.Ser519=) rs142180374
NM_007254.3(PNKP):c.188C>T (p.Ala63Val) rs3739173
NM_007254.3(PNKP):c.416G>A (p.Arg139His) rs34472250
NM_007254.3(PNKP):c.501G>A (p.Val167=) rs142143566
NM_007254.3(PNKP):c.519C>T (p.Asp173=) rs144284975
NM_007254.3(PNKP):c.538C>A (p.Arg180Ser) rs3739185
NM_007254.3(PNKP):c.564C>T (p.Gly188=) rs574408360
NM_007254.3(PNKP):c.579-4G>A rs371834726
NM_007254.3(PNKP):c.579-5C>T rs767753048
NM_007254.3(PNKP):c.579G>A (p.Arg193=) rs145904995
NM_007254.3(PNKP):c.586T>A (p.Tyr196Asn) rs3739186
NM_007254.3(PNKP):c.58C>T (p.Pro20Ser) rs3739168
NM_007254.3(PNKP):c.624C>T (p.Ala208=) rs571119317
NM_007254.3(PNKP):c.627G>A (p.Glu209=) rs532550120
NM_007254.3(PNKP):c.636+7G>A rs3739187
NM_007254.3(PNKP):c.666C>T (p.Ile222=) rs587784369
NM_007254.3(PNKP):c.672C>T (p.Arg224=) rs151180981
NM_007254.3(PNKP):c.678G>A (p.Lys226=) rs141969535
NM_007254.3(PNKP):c.762C>T (p.His254=) rs794727920
NM_007254.3(PNKP):c.783G>A (p.Pro261=) rs145307985
NM_007254.3(PNKP):c.831G>A (p.Thr277=) rs148491228
NM_007254.3(PNKP):c.865+9C>T rs1555811201
NM_007254.3(PNKP):c.876A>G (p.Gly292=) rs3739199
NM_007254.3(PNKP):c.936+17dupC rs3739200
NM_007254.3(PNKP):c.939T>C (p.Phe313=) rs149731642
NM_007254.3(PNKP):c.968C>T (p.Thr323Met) rs372148913
NM_007254.4(PNKP):c.1286_1298+6dup rs760249644

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