ClinVar Miner

Variants in gene PYGM with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
183 32 0 22 15 0 5 39

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 13 2 0 1
likely pathogenic 13 0 4 0 0
uncertain significance 2 4 0 14 2
likely benign 0 0 14 0 9
benign 1 0 2 9 0

All variants with conflicting interpretations #

Total variants: 39
Download table as spreadsheet
HGVS dbSNP
NM_005609.2(PYGM):c.1466C>G (p.Pro489Arg) rs398124209
NM_005609.2(PYGM):c.1726C>T (p.Arg576Ter) rs119103255
NM_005609.2(PYGM):c.1924C>T (p.Arg642Cys) rs116180923
NM_005609.2(PYGM):c.425_528del rs764313717
NM_005609.2(PYGM):c.645G>A (p.Lys215=) rs116315896
NM_005609.3(PYGM):c.1083C>T (p.Asp361=) rs141959242
NM_005609.3(PYGM):c.1092+6dupC rs368602234
NM_005609.3(PYGM):c.1094C>T (p.Ala365Val) rs116135678
NM_005609.3(PYGM):c.1184C>T (p.Thr395Met) rs71581787
NM_005609.3(PYGM):c.1240C>G (p.Arg414Gly) rs11231866
NM_005609.3(PYGM):c.1366G>A (p.Val456Met) rs398124208
NM_005609.3(PYGM):c.1465C>T (p.Pro489Ser) rs752622662
NM_005609.3(PYGM):c.1494C>T (p.Pro498=) rs11231865
NM_005609.3(PYGM):c.1537A>G (p.Ile513Val) rs139570786
NM_005609.3(PYGM):c.1569C>G (p.Leu523=) rs114138772
NM_005609.3(PYGM):c.1621-19delT rs571976523
NM_005609.3(PYGM):c.1722T>G (p.Tyr574Ter) rs119103260
NM_005609.3(PYGM):c.1827G>A (p.Lys609=) rs119103259
NM_005609.3(PYGM):c.182G>A (p.Arg61His) rs145514333
NM_005609.3(PYGM):c.1870G>A (p.Val624Ile) rs143217651
NM_005609.3(PYGM):c.1A>G (p.Met1Val) rs267606993
NM_005609.3(PYGM):c.2056G>A (p.Gly686Arg) rs144081869
NM_005609.3(PYGM):c.2128_2130delTTC (p.Phe710del) rs527236147
NM_005609.3(PYGM):c.2177+7G>A rs201366697
NM_005609.3(PYGM):c.2262delA (p.Lys754Asnfs) rs398124210
NM_005609.3(PYGM):c.2268C>T (p.Pro756=) rs144229867
NM_005609.3(PYGM):c.2312G>A (p.Arg771Gln) rs150911354
NM_005609.3(PYGM):c.2382C>T (p.Asn794=) rs540487525
NM_005609.3(PYGM):c.2392T>C (p.Trp798Arg) rs119103258
NM_005609.3(PYGM):c.255C>A (p.Tyr85Ter) rs527236146
NM_005609.3(PYGM):c.256C>T (p.Leu86=) rs541817643
NM_005609.3(PYGM):c.330C>T (p.Asp110=) rs114742918
NM_005609.3(PYGM):c.577G>T (p.Ala193Ser) rs77656150
NM_005609.3(PYGM):c.660G>A (p.Gln220=) rs142234258
NM_005609.3(PYGM):c.661-5C>G rs75633423
NM_005609.3(PYGM):c.808C>T (p.Arg270Ter) rs767739769
NM_005609.3(PYGM):c.848A>G (p.Asn283Ser) rs114468011
NM_005609.3(PYGM):c.924C>T (p.Ile308=) rs139726186
NM_005609.3(PYGM):c.999+20C>T rs201711087

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