ClinVar Miner

Variants in gene RAPSN with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
240 8 0 10 3 0 1 13

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 4 0 0 0
likely pathogenic 4 0 1 0 0
uncertain significance 0 1 0 3 0
likely benign 0 0 3 0 6
benign 0 0 0 6 0

All variants with conflicting interpretations #

Total variants: 13
Download table as spreadsheet
NG_008312.1(RAPSN):g.5005A>G rs786200905
NM_005055.5(RAPSN):c.1041G>A (p.Ala347=) rs149683345
NM_005055.5(RAPSN):c.1143T>C (p.Pro381=) rs7126210
NM_005055.5(RAPSN):c.133G>A (p.Val45Met) rs121909254
NM_005055.5(RAPSN):c.162G>A (p.Ser54=) rs72905825
NM_005055.5(RAPSN):c.172C>T (p.Arg58Cys) rs34312154
NM_005055.5(RAPSN):c.264C>A (p.Asn88Lys) rs104894299
NM_005055.5(RAPSN):c.456T>C (p.Tyr152=) rs7111873
NM_005055.5(RAPSN):c.474C>T (p.Asp158=) rs56245238
NM_005055.5(RAPSN):c.567G>A (p.Ala189=) rs886043559
NM_005055.5(RAPSN):c.821G>A (p.Ser274Asn) rs140996453
NM_005055.5(RAPSN):c.848T>C (p.Leu283Pro) rs104894293
NM_005055.5(RAPSN):c.855G>A (p.Gln285=) rs45603036

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