ClinVar Miner

Variants in gene SAMD9 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
921 175 0 14 23 0 4 39

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 1 1 0 0
likely pathogenic 1 0 3 0 0
uncertain significance 1 3 0 23 2
likely benign 0 0 23 0 13
benign 0 0 2 13 0

All variants with conflicting interpretations #

Total variants: 39
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_017654.4(SAMD9):c.995T>C (p.Ile332Thr) rs76377166 0.01341
NM_017654.4(SAMD9):c.4733T>C (p.Ile1578Thr) rs144380633 0.00655
NM_017654.4(SAMD9):c.1347T>C (p.Asn449=) rs150107667 0.00542
NM_017654.4(SAMD9):c.1398A>C (p.Pro466=) rs138066899 0.00533
NM_017654.4(SAMD9):c.4666G>A (p.Ala1556Thr) rs34896991 0.00462
NM_017654.4(SAMD9):c.257C>T (p.Ser86Phe) rs147157740 0.00428
NM_017654.4(SAMD9):c.1920C>T (p.Val640=) rs115425131 0.00377
NM_017654.4(SAMD9):c.4102G>A (p.Glu1368Lys) rs138600971 0.00155
NM_017654.4(SAMD9):c.4724G>A (p.Gly1575Glu) rs148724199 0.00129
NM_017654.4(SAMD9):c.4673T>A (p.Leu1558Ter) rs150862618 0.00036
NM_017654.4(SAMD9):c.1058C>T (p.Thr353Met) rs138478808 0.00034
NM_017654.4(SAMD9):c.2845G>T (p.Ala949Ser) rs151038564 0.00033
NM_017654.4(SAMD9):c.2374G>A (p.Val792Ile) rs147587391 0.00031
NM_017654.4(SAMD9):c.1880del (p.Ser627fs) rs767270627 0.00023
NM_017654.4(SAMD9):c.4417C>T (p.Arg1473Cys) rs145665736 0.00021
NM_017654.4(SAMD9):c.662G>A (p.Arg221Gln) rs148603551 0.00016
NM_017654.4(SAMD9):c.3215T>C (p.Leu1072Pro) rs144312575 0.00010
NM_017654.4(SAMD9):c.3171A>G (p.Ala1057=) rs202205898 0.00009
NM_017654.4(SAMD9):c.4586G>A (p.Arg1529His) rs149966534 0.00008
NM_017654.4(SAMD9):c.1370A>C (p.Glu457Ala) rs147552284 0.00006
NM_017654.4(SAMD9):c.3519A>C (p.Arg1173Ser) rs566059003 0.00005
NM_017654.4(SAMD9):c.4396G>A (p.Gly1466Arg) rs755857667 0.00005
NM_017654.4(SAMD9):c.3381C>A (p.Tyr1127Ter) rs572380130 0.00003
NM_017654.4(SAMD9):c.1191A>G (p.Leu397=) rs1791604504 0.00002
NM_017654.4(SAMD9):c.521G>A (p.Arg174His) rs779289964 0.00002
NM_017654.4(SAMD9):c.1052A>T (p.Asp351Val) rs757652918 0.00001
NM_017654.4(SAMD9):c.3176A>G (p.His1059Arg) rs377438913 0.00001
NM_017654.4(SAMD9):c.4597C>A (p.Arg1533=) rs375396225 0.00001
NM_017654.4(SAMD9):c.1800_1801del (p.Glu600fs) rs375515095
NM_017654.4(SAMD9):c.2419G>A (p.Val807Ile) rs1554337067
NM_017654.4(SAMD9):c.2715G>A (p.Leu905=)
NM_017654.4(SAMD9):c.2855G>C (p.Gly952Ala)
NM_017654.4(SAMD9):c.2945G>A (p.Arg982His) rs1554336974
NM_017654.4(SAMD9):c.3243T>C (p.Asn1081=)
NM_017654.4(SAMD9):c.3626A>T (p.Gln1209Leu)
NM_017654.4(SAMD9):c.3651dup (p.Asp1218Ter) rs199887936
NM_017654.4(SAMD9):c.3728_3731del (p.Asn1243fs) rs778111446
NM_017654.4(SAMD9):c.4198C>T (p.Pro1400Ser) rs1584251663
NM_017654.4(SAMD9):c.4734T>C (p.Ile1578=)

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