ClinVar Miner

Variants in gene SLC13A5 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
103 25 0 7 5 0 1 13

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 2 1 0 0
likely pathogenic 2 0 0 0 0
uncertain significance 1 0 0 4 1
likely benign 0 0 4 0 5
benign 0 0 1 5 0

All variants with conflicting interpretations #

Total variants: 13
Download table as spreadsheet
HGVS dbSNP
NM_177550.4(SLC13A5):c.-5G>A rs201070767
NM_177550.4(SLC13A5):c.1037G>T (p.Trp346Leu) rs746999375
NM_177550.4(SLC13A5):c.1077G>A (p.Val359=) rs372363091
NM_177550.4(SLC13A5):c.1101A>G (p.Leu367=) rs61520357
NM_177550.4(SLC13A5):c.1330C>T (p.Pro444Ser) rs765709852
NM_177550.4(SLC13A5):c.1395C>T (p.Asn465=) rs150722760
NM_177550.4(SLC13A5):c.231+6C>A rs138834680
NM_177550.4(SLC13A5):c.425C>T (p.Thr142Met) rs761917087
NM_177550.4(SLC13A5):c.426G>A (p.Thr142=) rs72836208
NM_177550.4(SLC13A5):c.655G>A (p.Gly219Arg) rs144332569
NM_177550.4(SLC13A5):c.680C>T (p.Thr227Met) rs587777577
NM_177550.4(SLC13A5):c.714C>T (p.Asn238=) rs754553205
NM_177550.4(SLC13A5):c.801C>T (p.Phe267=) rs200645836

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