ClinVar Miner

Variants in gene SLC9A6 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
192 15 0 7 8 0 0 15

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 2 0 0 0
likely pathogenic 2 0 0 0 0
uncertain significance 0 0 0 5 3
likely benign 0 0 5 0 5
benign 0 0 3 5 0

All variants with conflicting interpretations #

Total variants: 15
Download table as spreadsheet
HGVS dbSNP
NM_001042537.1(SLC9A6):c.*5_*8delinsTT rs797044655
NM_001042537.1(SLC9A6):c.526-9_526-5del rs796053290
NM_006359.3(SLC9A6):c.*12C>T rs190788663
NM_006359.3(SLC9A6):c.*8A>T rs200171451
NM_006359.3(SLC9A6):c.1143G>A (p.Leu381=) rs151178361
NM_006359.3(SLC9A6):c.1366+8G>A rs6654310
NM_006359.3(SLC9A6):c.141C>T (p.Gly47=) rs139299794
NM_006359.3(SLC9A6):c.1440C>T (p.Ser480=) rs782177396
NM_006359.3(SLC9A6):c.153A>G (p.Arg51=) rs782090744
NM_006359.3(SLC9A6):c.1607G>A (p.Arg536Gln) rs146263125
NM_006359.3(SLC9A6):c.1631+1G>A rs796053283
NM_006359.3(SLC9A6):c.1659C>T (p.Ser553=) rs2307131
NM_006359.3(SLC9A6):c.1991C>T (p.Thr664Met) rs886044780
NM_006359.3(SLC9A6):c.25G>T (p.Ala9Ser) rs201523857
NM_006359.3(SLC9A6):c.698-5A>G rs1057520615

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