ClinVar Miner

Variants in gene SQSTM1 with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
82 7 0 12 3 0 3 16

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 2 2 1 1
likely pathogenic 2 0 1 0 1
uncertain significance 2 1 0 1 2
likely benign 1 0 1 0 10
benign 1 1 2 10 0

All variants with conflicting interpretations #

Total variants: 16
Download table as spreadsheet
NM_003900.5(SQSTM1):c.1044G>A (p.Pro348=) rs10058037
NM_003900.5(SQSTM1):c.1160C>T (p.Pro387Leu) rs776749939
NM_003900.5(SQSTM1):c.1175C>T (p.Pro392Leu) rs104893941
NM_003900.5(SQSTM1):c.183C>T (p.Gly61=) rs767340839
NM_003900.5(SQSTM1):c.350C>T (p.Ala117Val) rs147810437
NM_003900.5(SQSTM1):c.612A>G (p.Gly204=) rs878982215
NM_003900.5(SQSTM1):c.711_713GAA[1] (p.Lys238del) rs796052214
NM_003900.5(SQSTM1):c.819A>G (p.Pro273=) rs200388590
NM_003900.5(SQSTM1):c.822G>C (p.Glu274Asp) rs55793208
NM_003900.5(SQSTM1):c.876C>T (p.Asp292=) rs4935
NM_003900.5(SQSTM1):c.936G>A (p.Arg312=) rs4797
NM_003900.5(SQSTM1):c.954C>T (p.Ser318=) rs56092424
NM_003900.5(SQSTM1):c.955G>A (p.Glu319Lys) rs61748794
NM_003900.5(SQSTM1):c.961C>T (p.Arg321Cys) rs140226523
NM_003900.5(SQSTM1):c.98C>T (p.Ala33Val) rs200396166
NM_003900.5(SQSTM1):c.996A>G (p.Ser332=) rs141436407

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