ClinVar Miner

Variants in gene TCAP with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
69 27 0 5 8 0 4 15

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 1 2 0 0
likely pathogenic 1 0 2 0 0
uncertain significance 2 2 0 7 3
likely benign 0 0 7 0 4
benign 0 0 3 4 0

All variants with conflicting interpretations #

Total variants: 15
Download table as spreadsheet
NM_003673.3(TCAP):c.132C>T (p.Asp44=) rs397516861
NM_003673.3(TCAP):c.157C>T (p.Gln53Ter) rs104894655
NM_003673.3(TCAP):c.208C>T (p.Arg70Trp) rs775636212
NM_003673.3(TCAP):c.209G>A (p.Arg70Gln) rs552865793
NM_003673.3(TCAP):c.270G>A (p.Pro90=) rs372538567
NM_003673.3(TCAP):c.313G>C (p.Glu105Gln) rs146906267
NM_003673.3(TCAP):c.316C>T (p.Arg106Cys) rs45578741
NM_003673.3(TCAP):c.353C>T (p.Ala118Val) rs143233087
NM_003673.3(TCAP):c.37_39delGAG (p.Glu13del) rs397516862
NM_003673.3(TCAP):c.421C>G (p.Pro141Ala) rs45509691
NM_003673.3(TCAP):c.447C>T (p.Pro149=) rs45614332
NM_003673.3(TCAP):c.453A>C (p.Ala151=) rs1053651
NM_003673.3(TCAP):c.458G>A (p.Arg153His) rs149585781
NM_003673.3(TCAP):c.472C>A (p.Arg158Ser) rs397516863
NM_003673.3(TCAP):c.60C>G (p.Ala20=) rs146502276

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