ClinVar Miner

Variants in gene TG with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
1619 84 0 23 14 0 5 39

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 6 3 0 0
likely pathogenic 6 0 3 0 0
uncertain significance 3 3 0 12 4
likely benign 0 0 12 0 17
benign 0 0 4 17 0

All variants with conflicting interpretations #

Total variants: 39
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_003235.5(TG):c.199G>A (p.Gly67Ser) rs116340633 0.00924
NM_003235.5(TG):c.3187C>A (p.Leu1063Met) rs11992497 0.00903
NM_003235.5(TG):c.7755-9T>G rs190979363 0.00473
NM_003235.5(TG):c.3313G>A (p.Val1105Ile) rs115670342 0.00443
NM_003235.5(TG):c.325A>G (p.Ile109Val) rs35301433 0.00350
NM_003235.5(TG):c.3129C>T (p.His1043=) rs112300885 0.00347
NM_003235.5(TG):c.144C>T (p.Tyr48=) rs114436500 0.00345
NM_003235.5(TG):c.4484T>C (p.Val1495Ala) rs61740825 0.00330
NM_003235.5(TG):c.6200-7T>A rs79724982 0.00240
NM_003235.5(TG):c.7083G>T (p.Ala2361=) rs116723711 0.00239
NM_003235.5(TG):c.2610G>T (p.Gln870His) rs2229843 0.00229
NM_003235.5(TG):c.7665C>T (p.Arg2555=) rs115139074 0.00214
NM_003235.5(TG):c.6181G>A (p.Gly2061Arg) rs115436575 0.00198
NM_003235.5(TG):c.3583G>A (p.Gly1195Arg) rs138469414 0.00197
NM_003235.5(TG):c.6646A>G (p.Ile2216Val) rs138690529 0.00179
NM_003235.5(TG):c.3665C>T (p.Ser1222Leu) rs12549018 0.00164
NM_003235.5(TG):c.1567T>C (p.Ser523Pro) rs116062097 0.00135
NM_003235.5(TG):c.3999C>G (p.Ile1333Met) rs150728539 0.00134
NM_003235.5(TG):c.3057C>T (p.Ser1019=) rs116032324 0.00120
NM_003235.5(TG):c.229G>A (p.Gly77Ser) rs142698837 0.00071
NM_003235.5(TG):c.455G>A (p.Arg152His) rs114781869 0.00059
NM_003235.5(TG):c.3139+9G>A rs201582196 0.00048
NM_003235.5(TG):c.4527C>T (p.His1509=) rs201216611 0.00039
NM_003235.5(TG):c.8026C>T (p.Arg2676Trp) rs114613744 0.00038
NM_003235.5(TG):c.1020C>T (p.Asp340=) rs138114586 0.00021
NM_003235.5(TG):c.4378G>A (p.Val1460Ile) rs199615848 0.00019
NM_003235.5(TG):c.4638C>T (p.Gly1546=) rs116663504 0.00018
NM_003235.5(TG):c.2762-4C>T rs372101475 0.00004
NM_003235.5(TG):c.475C>T (p.Arg159Ter) rs759267330 0.00004
NM_003235.5(TG):c.2359C>T (p.Arg787Ter) rs752966476 0.00002
NM_003235.5(TG):c.638+5G>A rs774274702 0.00001
NM_003235.5(TG):c.6725G>A (p.Arg2242His) rs2069566 0.00001
NM_003235.5(TG):c.85C>T (p.Gln29Ter) rs1554648860 0.00001
NM_003235.5(TG):c.2762-4del
NM_003235.5(TG):c.3847+1G>C
NM_003235.5(TG):c.478+15G>A rs141561325
NM_003235.5(TG):c.5509_5518del (p.Lys1837fs) rs1554681801
NM_003235.5(TG):c.5992C>T (p.Arg1998Ter)
NM_003235.5(TG):c.6933T>C (p.Ser2311=)

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