ClinVar Miner

Variants from ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, Inc. with conflicting interpretations

Location: United States — Primary collection method: clinical testing
Minimum review status of the submission from ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, Inc.: Collection method of the submission from ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, Inc.:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
1835 73 2 3 10 0 7 22

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, Inc. likely pathogenic uncertain significance likely benign benign
pathogenic 3 6 0 0
uncertain significance 1 2 6 1
likely benign 0 3 0 0

Submitter to submitter summary #

Total submitters: 3
Download table as spreadsheet
Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
ISCA site 1 0 28 2 3 3 0 4 12
Quest Diagnostics Nichols Institute San Juan Capistrano 0 43 0 0 6 0 2 8
ISCA site 17 0 3 0 0 1 0 1 2

All variants with conflicting interpretations #

Total variants: 22
Download table as spreadsheet
HGVS dbSNP
GRCh37/hg19 13q12.12(chr13:23519916-24928440)x1
GRCh37/hg19 13q31.3(chr13:92062055-92303438)x1
GRCh37/hg19 15q11.2(chr15:22770421-23195725)x1
GRCh37/hg19 15q11.2(chr15:22770421-23283811)x1
GRCh37/hg19 15q13.2-13.3(chr15:31073735-32444044)x3
GRCh37/hg19 16p11.2(chr16:28819028-29051191)x3
GRCh37/hg19 16p12.2(chr16:21801889-22431357)x3
GRCh37/hg19 16p12.3(chr16:19144340-19281768)x1
GRCh37/hg19 16p13.11(chr16:14897625-16516109)x1
GRCh37/hg19 16p13.11-12.3(chr16:15316618-18185466)x3
GRCh37/hg19 18q22.1(chr18:65687087-66530088)x4
GRCh37/hg19 1q24.2(chr1:168439652-168712431)x1
GRCh37/hg19 22q11.21-11.22(chr22:21029655-22481498)x1
GRCh37/hg19 2p21(chr2:45408934-45976420)x3
GRCh37/hg19 2q34(chr2:213969855-214925262)x3
GRCh37/hg19 4p16.3-16.1(chr4:68345-8731855)x3
GRCh37/hg19 6q14.2-14.3(chr6:84373742-85044270)x3
GRCh37/hg19 9p24.3(chr9:611150-694567)x1
GRCh37/hg19 Xp11.3(chrX:43396992-43626868)x2
GRCh38/hg38 16p12.2(chr16:21825971-22396751)x1
GRCh38/hg38 1q21.1(chr1:145705541-146009831)x1
GRCh38/hg38 1q21.1-21.2(chr1:145215697-149076087)x3

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