ClinVar Miner

Variants from Strand Center for Genomics and Personalized Medicine,Strand Life Sciences Pvt Ltd with conflicting interpretations

Location: India — Primary collection method: clinical testing
Minimum review status of the submission from Strand Center for Genomics and Personalized Medicine,Strand Life Sciences Pvt Ltd: Collection method of the submission from Strand Center for Genomics and Personalized Medicine,Strand Life Sciences Pvt Ltd:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
11 1 0 3 0 0 1 4

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Strand Center for Genomics and Personalized Medicine,Strand Life Sciences Pvt Ltd pathogenic benign
likely pathogenic 3 1

Submitter to submitter summary #

Total submitters: 7
Download table as spreadsheet
Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) 0 0 0 2 0 0 0 2
Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine 0 0 0 0 0 0 1 1
GeneDx 0 0 0 1 0 0 0 1
Ambry Genetics 0 0 0 0 0 0 1 1
Counsyl 0 0 0 1 0 0 0 1
Invitae 0 0 0 0 0 0 1 1
Quest Diagnostics Nichols Institute San Juan Capistrano 0 0 0 1 0 0 0 1

All variants with conflicting interpretations #

Total variants: 4
Download table as spreadsheet
HGVS dbSNP
NM_003803.3(MYOM1):c.1900+3A>C rs77613865
NM_004415.3(DSP):c.2131_2132delAG (p.Ser711Cysfs) rs587782927
NM_007294.3(BRCA1):c.4837_4838delAGinsGCC (p.Ser1613Alafs) rs730880287
NM_007294.3(BRCA1):c.5133delA (p.Lys1711Asnfs) rs730880288

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