ClinVar Miner

Variants from Molecular Oncology Laboratory,Centre Jean Perrin with conflicting interpretations

Location: France — Primary collection method: case-control
Minimum review status of the submission from Molecular Oncology Laboratory,Centre Jean Perrin: Collection method of the submission from Molecular Oncology Laboratory,Centre Jean Perrin:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
1 0 0 0 0 2 0 2

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Molecular Oncology Laboratory,Centre Jean Perrin uncertain significance
association 2

Submitter to submitter summary #

Total submitters: 8
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Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Ambry Genetics 0 0 0 0 0 2 0 2
GeneDx 0 0 0 0 0 1 0 1
Counsyl 0 0 0 0 0 1 0 1
Invitae 0 0 0 0 0 1 0 1
Mendelics 0 0 0 0 0 1 0 1
Fulgent Genetics 0 0 0 0 0 1 0 1
Quest Diagnostics Nichols Institute San Juan Capistrano 0 0 0 0 0 1 0 1
Color 0 0 0 0 0 1 0 1

All variants with conflicting interpretations #

Total variants: 2
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HGVS dbSNP
NM_001005735.1(CHEK2):c.1214G>A (p.Cys405Tyr) rs767306337
NM_024675.3(PALB2):c.2897T>C (p.Ile966Thr) rs587780214

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