ClinVar Miner

Variants from McDonnell Genome Institute,Washington University in St. Louis with conflicting interpretations

Location: United States — Primary collection method: research
Minimum review status of the submission from McDonnell Genome Institute,Washington University in St. Louis: Collection method of the submission from McDonnell Genome Institute,Washington University in St. Louis:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
41 0 0 1 0 0 1 2

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
McDonnell Genome Institute,Washington University in St. Louis likely pathogenic likely benign benign
pathogenic 1 1 1

Submitter to submitter summary #

Total submitters: 6
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Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Genetic Services Laboratory, University of Chicago 0 0 0 0 0 0 1 1
GeneDx 0 1 0 0 0 0 1 1
Invitae 0 1 0 0 0 0 1 1
Illumina Clinical Services Laboratory,Illumina 0 0 0 0 0 0 1 1
Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinics 0 0 0 0 0 0 1 1
German Consortium for Hereditary Breast and Ovarian Cancer Center Cologne,University Hospital Cologne 0 0 0 1 0 0 0 1

All variants with conflicting interpretations #

Total variants: 2
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HGVS dbSNP
NM_000135.2(FANCA):c.2574C>G (p.Ser858Arg) rs17233141
NM_000314.4(PTEN):c.406T>C (p.Cys136Arg) rs786201044

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