ClinVar Miner

Variants from IntelligeneCG with conflicting interpretations

Location: United States — Primary collection method: clinical testing
Minimum review status of the submission from IntelligeneCG: Collection method of the submission from IntelligeneCG:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
0 5 5 6 2 1 0 8

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
IntelligeneCG uncertain significance likely benign benign drug response
benign 2 6 5 1

Submitter to submitter summary #

Total submitters: 6
Download table as spreadsheet
Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Illumina Clinical Services Laboratory,Illumina 0 4 0 6 0 0 0 6
Biesecker Lab/Human Development Section,National Institutes of Health 0 0 5 0 0 0 0 5
International Society for Gastrointestinal Hereditary Tumours (InSiGHT) 0 0 3 0 0 0 0 3
PharmGKB 0 0 0 0 0 1 0 1
Breast Cancer Information Core (BIC) (BRCA2) 0 0 0 0 1 0 0 1
Pathway Genomics 0 3 0 0 1 0 0 1

All variants with conflicting interpretations #

Total variants: 8
Download table as spreadsheet
HGVS dbSNP
NM_000059.3(BRCA2):c.7397C>T (p.Ala2466Val) rs169547
NM_000179.2(MSH6):c.116G>A (p.Gly39Glu) rs1042821
NM_000249.3(MLH1):c.655A>G (p.Ile219Val) rs1799977
NM_000535.6(PMS2):c.1408C>T (p.Pro470Ser) rs1805321
NM_000546.5(TP53):c.215C>G (p.Pro72Arg) rs1042522
NM_002354.2(EPCAM):c.344T>C (p.Met115Thr) rs1126497
NM_007294.3(BRCA1):c.2612C>T (p.Pro871Leu) rs799917
NM_032043.2(BRIP1):c.2755T>C (p.Ser919Pro) rs4986764

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.