ClinVar Miner

Variants from Laboratory of Molecular Neuropathology,The University of Texas Health Science Center at Houston with conflicting interpretations

Location: United States — Primary collection method: clinical testing
Minimum review status of the submission from Laboratory of Molecular Neuropathology,The University of Texas Health Science Center at Houston: Collection method of the submission from Laboratory of Molecular Neuropathology,The University of Texas Health Science Center at Houston:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
4 0 0 0 1 0 1 2

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Laboratory of Molecular Neuropathology,The University of Texas Health Science Center at Houston pathogenic likely benign
uncertain significance 1 1

Submitter to submitter summary #

Total submitters: 24
Download table as spreadsheet
Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Genetic Services Laboratory, University of Chicago 0 0 0 0 1 0 1 2
Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine 0 0 0 0 0 0 1 1
ARUP Laboratories, Molecular Genetics and Genomics,ARUP Laboratories 0 0 0 0 0 0 1 1
GeneDx 0 0 0 0 0 0 1 1
Ambry Genetics 0 0 0 0 0 0 1 1
PreventionGenetics 0 0 0 0 0 0 1 1
Counsyl 0 0 0 0 0 0 1 1
Integrated Genetics/Laboratory Corporation of America 0 0 0 0 0 0 1 1
Invitae 0 0 0 0 0 0 1 1
Mendelics 0 0 0 0 0 0 1 1
Mayo Clinic Genetic Testing Laboratories,Mayo Clinic 0 0 0 0 0 0 1 1
Fulgent Genetics 0 0 0 0 0 0 1 1
Quest Diagnostics Nichols Institute San Juan Capistrano 0 0 0 0 0 0 1 1
Illumina Clinical Services Laboratory,Illumina 0 0 0 0 0 0 1 1
Pathway Genomics 0 0 0 0 0 0 1 1
GeneKor MSA 0 0 0 0 0 0 1 1
Genome Sciences Centre,British Columbia Cancer Agency 0 0 0 0 0 0 1 1
Color 0 0 0 0 0 0 1 1
A.C.Camargo Cancer Center / LGBM, A.C.Camargo Cancer Center 0 0 0 0 0 0 1 1
CHLA Center for Personalized Medicine,Children's Hospital, Los Angeles 0 0 0 0 0 0 1 1
True Health Diagnostics 0 0 0 0 0 0 1 1
Clinical Genomics Lab,St. Jude Children's Research Hospital 0 0 0 0 0 0 1 1
University of Washington Department of Laboratory Medicine,University of Washington 0 0 0 0 0 0 1 1
German Consortium for Hereditary Breast and Ovarian Cancer Center Cologne,University Hospital Cologne 0 0 0 0 0 0 1 1

All variants with conflicting interpretations #

Total variants: 2
Download table as spreadsheet
HGVS dbSNP
NM_006015.5(ARID1A):c.60_62dup (p.Pro21_Ser22insPro) rs748085214
NM_007194.3(CHEK2):c.1100delC (p.Thr367Metfs) rs555607708

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