ClinVar Miner

Variants from Tampere Brain Tumor Research Consortium,University of Tampere with conflicting interpretations

Location: Finland — Primary collection method: research
Minimum review status of the submission from Tampere Brain Tumor Research Consortium,University of Tampere: Collection method of the submission from Tampere Brain Tumor Research Consortium,University of Tampere:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
0 0 0 1 0 0 1 2

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Tampere Brain Tumor Research Consortium,University of Tampere likely pathogenic likely benign benign
pathogenic 1 1 1

Submitter to submitter summary #

Total submitters: 9
Download table as spreadsheet
Submitter Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
Genetic Services Laboratory, University of Chicago 0 0 0 0 0 0 1 1
Ambry Genetics 0 1 0 0 0 0 1 1
Invitae 0 1 0 0 0 0 1 1
EGL Genetic Diagnostics,Eurofins Clinical Diagnostics 0 1 0 0 0 0 1 1
CSER_CC_NCGL; University of Washington Medical Center 0 0 0 1 0 0 0 1
Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinics 0 0 0 0 0 0 1 1
Database of Curated Mutations (DoCM) 0 0 0 1 0 0 0 1
Equipe Genetique des Anomalies du Developpement,Université de Bourgogne 0 0 0 0 0 0 1 1
German Consortium for Hereditary Breast and Ovarian Cancer Center Cologne,University Hospital Cologne 0 0 0 1 0 0 0 1

All variants with conflicting interpretations #

Total variants: 2
Download table as spreadsheet
HGVS dbSNP
NM_000489.4(ATRX):c.5579A>G (p.Asn1860Ser) rs45439799
NM_000546.5(TP53):c.733G>A (p.Gly245Ser) rs28934575

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