ClinVar Miner

Variants with conflicting interpretations between Gharavi Laboratory,Columbia University and Laboratory for Molecular Medicine,Partners HealthCare Personalized Medicine

Minimum review status of the submission from Gharavi Laboratory,Columbia University: Collection method of the submission from Gharavi Laboratory,Columbia University:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
0 21 0 4 4 0 3 11

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign
pathogenic 0 4 1 0
likely pathogenic 0 0 1 0
uncertain significance 1 0 0 2
likely benign 0 0 2 0

All variants with conflicting interpretations #

Total variants: 11
Download table as spreadsheet
NM_000169.2(GLA):c.352C>T (p.Arg118Cys) rs148158093
NM_000169.2(GLA):c.376A>G (p.Ser126Gly) rs149391489
NM_000256.3(MYBPC3):c.3815-1G>A rs397516044
NM_000339.3(SLC12A3):c.2221G>A (p.Gly741Arg) rs138977195
NM_000339.3(SLC12A3):c.363G>C (p.Glu121Asp) rs146632606
NM_000503.6(EYA1):c.865G>T (p.Asp289Tyr) rs201504674
NM_000551.3(VHL):c.241C>T (p.Pro81Ser) rs104893829
NM_004572.3(PKP2):c.1613G>A (p.Trp538Ter) rs193922672
NM_004985.5(KRAS):c.108A>G (p.Ile36Met) rs727503109
NM_004985.5(KRAS):c.34G>A (p.Gly12Ser) rs121913530
NM_144696.6(AXDND1):c.3032-1904C>T rs200482683

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