ClinVar Miner

Variants from Robert's Program, Boston Children's Hospital with conflicting interpretations

Location: United States  Primary collection method: research
Minimum review status of the submission from Robert's Program, Boston Children's Hospital: Collection method of the submission from Robert's Program, Boston Children's Hospital:
Minimum review status of the other submission: Collection method of the other submission:
Minimum conflict level:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
16 11 0 6 2 0 3 11

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

All submitters
Robert's Program, Boston Children's Hospital pathogenic likely pathogenic likely benign benign
pathogenic 0 4 0 0
likely pathogenic 2 0 0 0
uncertain significance 1 3 1 1

Submitter to submitter summary #

Total submitters: 9
Download table as spreadsheet
Submitter Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
GeneDx 0 15 0 1 0 0 3 4
Ambry Genetics 0 8 0 2 1 0 1 4
Invitae 0 1 0 1 1 0 1 3
Stanford Center for Inherited Cardiovascular Disease, Stanford University 0 1 0 2 0 0 0 2
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories 0 2 0 1 0 0 0 1
Revvity Omics, Revvity 0 2 0 0 0 0 1 1
Eurofins Ntd Llc (ga) 0 1 0 1 0 0 0 1
Blueprint Genetics 0 2 0 1 0 0 0 1
Color Diagnostics, LLC DBA Color Health 0 0 0 0 0 0 1 1

All variants with conflicting interpretations #

Total variants: 11
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_000335.5(SCN5A):c.3837+12C>T rs368550655 0.00013
NM_000363.5(TNNI3):c.556C>T (p.Arg186Trp) rs760978512 0.00004
NM_000891.3(KCNJ2):c.119G>A (p.Arg40Gln) rs766143485 0.00004
NM_000219.6(KCNE1):c.173C>T (p.Thr58Ile) rs747321794 0.00003
NM_001267550.2(TTN):c.98299_98300del (p.Arg32767fs) rs397517776 0.00002
NM_000256.3(MYBPC3):c.821+1G>A rs397516073 0.00001
NM_000335.5(SCN5A):c.4892G>A (p.Arg1631His) rs199473286 0.00001
NM_000363.5(TNNI3):c.433C>T (p.Arg145Trp) rs104894724 0.00001
NM_000335.5(SCN5A):c.4296+1del rs1450434935
NM_001242896.3(DEPDC5):c.2446C>T (p.Gln816Ter) rs2148968418
NM_001267550.2(TTN):c.97492+1G>C rs727505319

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