ClinVar Miner

Variants studied for familial tumoral calcinosis

Included ClinVar conditions (8):
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic likely pathogenic uncertain significance likely benign benign not provided total
29 24 293 48 48 4 438

Gene and significance breakdown #

Total genes and gene combinations: 6
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Gene or gene combination pathogenic likely pathogenic uncertain significance likely benign benign not provided total
GALNT3 18 16 99 5 11 0 149
KL 1 1 98 24 24 1 147
FGF23 7 4 77 12 13 1 108
SAMD9 3 3 18 7 0 1 32
A2ML1, ACRBP, ACSM4, ADIPOR2, AICDA, AKAP3, ANO2, APOBEC1, ATN1, B4GALNT3, C12orf57, C1R, C1RL, C1S, C3AR1, CACNA1C, CACNA1C-IT1, CACNA1C-IT2, CACNA1C-IT3, CACNA2D4, CCDC77, CCND2, CD163, CD163L1, CD27, CD4, CD9, CDCA3, CHD4, CLEC4A, CLEC4C, CLEC4D, CLEC4E, CLEC6A, CLSTN3, COPS7A, CRACR2A, DCP1B, DPPA3, DYRK4, EMG1, ENO2, ERC1, FAM138D, FAM66C, FAM90A1, FBXL14, FERRY3, FGF23, FGF6, FKBP4, FOXJ2, FOXM1, GALNT8, GAPDH, GAU1, GDF3, GNB3, GPR162, IFFO1, ING4, IQSEC3, ITFG2, KCNA1, KCNA5, KCNA6, KDM5A, KLRG1, LAG3, LINC00937, LINC00940, LINC00942, LINC02371, LINC02417, LINC02443, LINC02449, LINC02455, LINC02827, LINC02972, LOC100128253, LOC100507560, LOC102723544, LOC105369595, LOC105369617, LOC105369632, LOC106799839, LOC107436002, LOC107832852, LOC107832854, LOC107984507, LOC108178986, LOC108178987, LOC108942766, LOC109461484, LOC112136100, LOC112163552, LOC112163597, LOC112163604, LOC112163620, LOC112163621, LOC112163622, LOC112163623, LOC112163625, LOC112163626, LOC112163630, LOC113939935, LOC116268425, LOC116268426, LOC116268427, LOC116268428, LOC116268429, LOC116268430, LOC116268431, LOC120807612, LOC121392955, LOC121392956, LOC121403743, LOC121403744, LOC121466689, LOC121466690, LOC121832825, LOC121832826, LOC124625876, LOC124625877, LOC124625878, LOC124625879, LOC124625880, LOC124625881, LOC124625882, LOC124625883, LOC124625884, LOC124625885, LOC124625886, LOC124625887, LOC124625889, LOC124625890, LOC124625892, LOC124625893, LOC124625895, LOC124625896, LOC124625897, LOC124625898, LOC124625899, LOC124625900, LOC124906977, LOC126861410, LOC126861411, LOC126861412, LOC126861413, LOC126861414, LOC126861415, LOC126861416, LOC126861417, LOC126861418, LOC126861419, LOC126861420, LOC126861421, LOC126861422, LOC126861423, LOC126861424, LOC126861425, LOC126861426, LOC126861427, LOC126861428, LOC126861429, LOC126861430, LOC126861431, LOC126861432, LOC126861433, LOC126861434, LOC126861435, LOC126861436, LOC126861437, LOC126861438, LOC126861439, LOC126861440, LOC126861441, LOC126861442, LOC126861443, LOC126861444, LOC129390385, LOC129390386, LOC129390387, LOC129390388, LOC129390389, LOC129390390, LOC129390391, LOC129390392, LOC129390393, LOC129390394, LOC129390395, LOC130007132, LOC130007133, LOC130007134, LOC130007135, LOC130007136, LOC130007137, LOC130007138, LOC130007139, LOC130007140, LOC130007141, LOC130007142, LOC130007143, LOC130007144, LOC130007145, LOC130007146, LOC130007147, LOC130007148, LOC130007149, LOC130007150, LOC130007151, LOC130007152, LOC130007153, LOC130007154, LOC130007155, LOC130007156, LOC130007157, LOC130007158, LOC130007159, LOC130007160, LOC130007161, LOC130007162, LOC130007163, LOC130007164, LOC130007165, LOC130007166, LOC130007167, LOC130007168, LOC130007169, LOC130007170, LOC130007171, LOC130007172, LOC130007173, LOC130007174, LOC130007175, LOC130007176, LOC130007177, LOC130007178, LOC130007179, LOC130007180, LOC130007181, LOC130007182, LOC130007183, LOC130007184, LOC130007185, LOC130007186, LOC130007187, LOC130007188, LOC130007189, LOC130007190, LOC130007191, LOC130007192, LOC130007193, LOC130007194, LOC130007195, LOC130007196, LOC130007197, LOC130007198, LOC130007199, LOC130007200, LOC130007201, LOC130007202, LOC130007203, LOC130007204, LOC130007205, LOC130007206, LOC130007207, LOC130007208, LOC130007209, LOC130007210, LOC130007211, LOC130007212, LOC130007213, LOC130007214, LOC130007215, LOC130007216, LOC130007217, LOC130007218, LOC130007219, LOC130007220, LOC130007221, LOC130007222, LOC130007223, LOC130007224, LOC130007225, LOC130007226, LOC130007227, LOC130007228, LOC130007229, LOC130007230, LOC130007231, LOC130007232, LOC130007233, LOC130007234, LOC130007235, LOC130007236, LOC130007237, LOC130007238, LOC130007239, LOC130007240, LOC130007241, LOC130007242, LOC130007243, LOC130007244, LOC130007245, LOC130007246, LOC130007247, LOC130007248, LOC130007249, LOC130007250, LOC130007251, LOC130007252, LOC130007253, LOC130007254, LOC130007255, LOC130007256, LOC130007257, LOC130007258, LOC130007259, LOC130007260, LOC130007261, LOC130007262, LOC130007263, LOC130007264, LOC130007265, LOC130007266, LOC130007267, LOC130007268, LOC130007269, LOC130007270, LOC130007271, LOC130007272, LOC130007273, LOC130007274, LOC130007275, LOC130007276, LOC130007277, LOC130007278, LOC130007279, LOC130007280, LOC130007281, LOC130007282, LOC130007283, LOC130007284, LOC130007285, LOC130007286, LOC130007287, LOC130007288, LOC130007289, LOC130007290, LOC130007291, LOC130007292, LOC130007293, LOC130007294, LOC130007295, LOC130007296, LOC130007297, LOC130007298, LOC130007299, LOC130007300, LOC130007301, LOC130007302, LOC130007303, LOC130007304, LOC130007305, LOC130007306, LOC130007307, LOC130007308, LOC130007309, LOC130007310, LOC130007311, LOC130007312, LOC130007313, LOC130007314, LOC130007315, LOC130007316, LOC130007317, LOC130007318, LOC130007319, LOC130007320, LOC130007321, LOC130007322, LOC130007323, LOC130007324, LOC130007325, LOC130007326, LOC130007327, LOC130007328, LOC130007329, LOC130007330, LOC130007331, LOC130007332, LOC130007333, LOC130007334, LOC130007335, LOC130007336, LOC130007337, LOC130007338, LOC130007339, LOC132090142, LOC574538, LPAR5, LPCAT3, LRRC23, LRTM2, LTBR, M6PR, MFAP5, MIR141, MIR200C, MIR200CHG, MIR3649, MLF2, MRPL51, NANOG, NANOGNB, NCAPD2, NDUFA9, NECAP1, NINJ2, NOP2, NRIP2, NTF3, P3H3, PARP11, PEX5, PHB2, PHC1, PIANP, PLEKHG6, PRMT8, PTMS, PTPN6, RAD51AP1, RAD52, RBP5, RHNO1, RIMKLB, RNU7-1, SCARNA10, SCARNA11, SCARNA12, SCNN1A, SLC2A14, SLC2A3, SLC6A12, SLC6A13, SNORA120, SPSB2, TAPBPL, TEAD4, TEX52, THCAT155, TIGAR, TNFRSF1A, TPI1, TSPAN9, TSPAN9-IT1, TULP3, USP5, VAMP1, VWF, WNK1, WNT5B, ZNF384, ZNF705A 0 0 0 0 0 1 1
KL, LOC130009539 0 0 1 0 0 0 1

Submitter and significance breakdown #

Total submitters: 29
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Submitter pathogenic likely pathogenic uncertain significance likely benign benign not provided total
Illumina Laboratory Services, Illumina 0 0 164 23 44 0 231
Fulgent Genetics, Fulgent Genetics 10 16 131 25 5 0 187
OMIM 19 0 0 0 0 0 19
Counsyl 0 2 6 1 0 0 9
Genome-Nilou Lab 0 0 0 0 8 0 8
Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago 0 0 3 1 0 0 4
GeneReviews 0 0 0 0 0 3 3
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute 2 0 0 1 0 0 3
Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München 3 0 0 0 0 0 3
Baylor Genetics 2 0 0 0 0 0 2
Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center 1 1 0 0 0 0 2
Soonchunhyang University Bucheon Hospital, Soonchunhyang University Medical Center 0 0 2 0 0 0 2
SIB Swiss Institute of Bioinformatics 1 1 0 0 0 0 2
MVZ Medizinische Genetik Mainz 1 0 1 0 0 0 2
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine 0 0 1 0 0 0 1
Women's Health and Genetics/Laboratory Corporation of America, LabCorp 0 1 0 0 0 0 1
Mendelics 0 0 0 0 1 0 1
Genomic Medicine Center of Excellence, King Faisal Specialist Hospital and Research Centre 1 0 0 0 0 0 1
Genomic Research Center, Shahid Beheshti University of Medical Sciences 0 0 1 0 0 0 1
UCLA Clinical Genomics Center, UCLA 0 1 0 0 0 0 1
Centre for Mendelian Genomics, University Medical Centre Ljubljana 0 0 1 0 0 0 1
Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India 0 1 0 0 0 0 1
Juno Genomics, Hangzhou Juno Genomics, Inc 0 0 1 0 0 0 1
Breda Genetics srl 0 1 0 0 0 0 1
Al Jalila Children’s Genomics Center, Al Jalila Childrens Speciality Hospital 0 1 0 0 0 0 1
GenomeConnect - CFC International 0 0 0 0 0 1 1
Endocrine Research Center, Institute of Endocrinology and Metabolism, Iran University of Medical Sciences 0 0 1 0 0 0 1
Neuberg Centre For Genomic Medicine, NCGM 0 1 0 0 0 0 1
Eurofins-Biomnis 0 1 0 0 0 0 1

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