ClinVar Miner

Variants studied for combined oxidative phosphorylation deficiency

Included ClinVar conditions (82):
Minimum submission review status: Collection method:
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Gene type:
ClinVar version:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic likely pathogenic uncertain significance likely benign benign not provided total
534 412 2353 1570 314 22 4997

Gene and significance breakdown #

Total genes and gene combinations: 110
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Gene or gene combination pathogenic likely pathogenic uncertain significance likely benign benign not provided total
ELAC2 54 23 398 477 35 0 977
MTO1 53 20 319 274 10 0 666
CARS2 5 5 309 289 27 2 623
AIFM1, RAB33A 9 7 142 165 29 1 344
FARS2 41 20 120 108 11 0 284
GFM1 29 107 76 26 29 0 245
FARS2, LOC126859565 15 9 88 65 9 1 176
MTRFR 15 2 79 42 8 1 140
FASTKD2 9 11 84 16 4 0 121
RMND1 11 15 73 7 4 1 106
TSFM 5 45 46 10 4 0 103
AARS2 9 7 42 10 23 2 85
AARS2, POLR1C 5 2 61 1 15 0 84
EARS2 19 7 39 6 11 3 80
CARS2, LOC130010127 1 0 45 27 2 0 74
TUFM 3 1 41 4 7 0 55
VARS2 12 12 27 0 6 0 50
EARS2, GGA2 0 0 25 7 15 0 47
NARS2 17 7 19 1 2 2 44
PNPT1 14 12 14 1 6 1 44
POLRMT 11 5 27 2 0 0 43
ATPAF2 1 0 29 1 8 0 38
GTPBP3 9 11 15 1 5 1 38
MIPEP 7 10 17 3 2 0 37
TARS2 12 22 18 1 1 0 37
AIFM1, LOC130068679, RAB33A 0 0 16 13 5 0 33
MRPS22 6 3 20 2 1 0 30
TRIT1 12 6 13 0 1 0 26
GFM2 6 2 12 1 0 3 22
MTFMT 10 5 7 0 1 1 22
SFXN4 7 2 2 0 6 0 17
LOC130058735, TUFM 0 0 10 1 1 0 12
PTCD3 6 2 4 0 0 0 12
SLC25A26 4 2 3 0 4 0 12
DNAJC9, MRPS16 1 0 11 0 0 0 11
PRORP, PRORP-PSMA6 7 2 4 0 0 0 11
QRSL1 5 1 3 0 3 0 11
ATP5F1A 6 2 4 0 0 0 10
FASTKD2, LOC126806484 3 0 7 0 0 0 10
LOC101928525, MRPS2 3 2 7 0 0 0 10
LOC126859646, VARS2 4 2 2 0 2 1 10
TRMT5 4 2 4 1 0 0 10
C2orf69 7 1 1 0 0 0 9
MRPL44 5 2 1 1 0 1 8
FARS2, LYRM4 4 1 2 0 0 0 7
TAMM41 6 0 3 0 0 0 7
AVIL, TSFM 0 0 2 0 4 0 6
C1QBP 6 0 0 0 0 0 6
LOC112903839, MRPS22 0 0 6 0 0 0 6
MARS2 3 0 2 0 1 0 6
MRPL3 1 1 3 0 0 1 6
ATPAF2, LOC130060411 0 0 3 1 1 0 5
GATB 2 0 2 0 1 0 5
MPHOSPH9, MTRFR 0 0 5 0 0 0 5
MYCL, TRIT1 1 1 3 0 1 0 5
NSUN3 4 1 0 0 0 0 5
AIFM1 0 0 4 0 0 0 4
MRPL39 4 0 0 0 0 0 4
MRPS34 1 2 1 0 0 0 4
MT-ATP6 4 0 0 0 0 0 4
TRMT10C 2 1 1 0 0 0 4
TXN2 1 0 1 1 1 0 4
AIFM1, LOC126863317, RAB33A 0 0 0 3 0 0 3
ATP5MK 1 1 1 0 0 0 3
CRLS1 3 0 0 0 0 0 3
FARS2, LOC129995672, LYRM4 0 0 1 1 1 0 3
GGA3, MRPS7 0 0 0 0 3 0 3
MICOS13 3 0 0 0 0 0 3
NFS1 1 0 3 0 0 0 3
TIMM22 2 0 1 0 1 0 3
ATP5F1E, SLMO2-ATP5E 1 0 1 0 0 0 2
CARS2, NAXD 0 0 2 0 0 0 2
EARS2, LOC130058664 0 0 2 0 0 0 2
EME2, MRPS34 1 1 0 0 1 0 2
GATC, LOC112163529 1 0 1 0 0 0 2
LOC129996722, MTO1 0 0 2 0 0 0 2
LOC130006506, NARS2 1 1 1 0 0 0 2
LYRM4 1 0 1 0 0 0 2
MRPS14 1 0 1 0 0 0 2
MRPS2 0 0 2 0 0 0 2
MRPS23 1 1 1 0 0 0 2
MRPS7 1 1 2 0 0 0 2
TMEM70 1 0 1 0 0 0 2
AIFM1, APLN, BCORL1, ELF4, OCRL, SASH3, UTP14A, XPNPEP2, ZDHHC9 0 0 1 0 0 0 1
ATP5PO 1 0 0 0 0 0 1
ATP5PO, LOC126653351 1 0 0 0 0 0 1
ATP5PO, LOC130066573 1 0 0 0 0 0 1
ATPAF2, LOC130060409 1 0 1 0 0 0 1
ATPAF2, LOC130060410 0 1 0 0 0 0 1
EEF1A1, MTO1 0 0 0 0 1 0 1
EME2, LOC130058184, MRPS34 1 1 0 0 0 0 1
F13A1, FARS2, LYRM4, NRN1 1 0 0 0 0 0 1
F13A1, FARS2, NRN1 0 0 1 0 0 0 1
FARS2, LOC121099722, LOC126859565, LOC129995674, LOC129995675, LOC129995676, LOC129995677, LOC129995678 0 1 0 0 0 0 1
FARS2, LOC126859565, LOC129995678 1 0 0 0 0 0 1
FASTKD2, LOC129935479 0 0 0 1 0 0 1
GATB, LOC129993225 0 0 0 0 1 0 1
LOC105374114, MRPL3 1 0 0 0 0 0 1
LOC110121048, LOC124174282, LOC124174283, LOC130000643, LOC130000644, MRPS28, TPD52-MRPS28 1 0 0 0 0 0 1
LOC129996910, QRSL1, RTN4IP1 0 0 1 0 0 0 1
LOC130006508, NARS2 0 0 1 0 0 0 1
LOC130009384, LOC130009385, MIPEP 0 1 0 0 0 0 1
LOC130009386, MIPEP 1 0 0 0 0 0 1
LOC130055775, TRMT5 0 0 1 0 0 0 1
LOC130058183, MRPS34 1 0 0 0 0 0 1
LOC130063256, MICOS13 0 0 1 0 0 0 1
MIPEP, PCOTH 0 0 1 0 0 0 1
MRPL12 1 0 0 0 0 0 1
MRPS28, TPD52-MRPS28 1 0 0 0 0 0 1
MT-ATP6, MT-ATP8, MT-CO1, MT-CO2, MT-CO3, MT-ND1, MT-ND2, MT-ND3, MT-ND4, MT-ND4L, MT-ND5, MT-TA, MT-TC, MT-TD, MT-TG, MT-TH, MT-TI, MT-TK, MT-TM, MT-TN, MT-TQ, MT-TR, MT-TS1, MT-TS2, MT-TW, MT-TY 1 0 0 0 0 0 1

Submitter and significance breakdown #

Total submitters: 125
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Submitter pathogenic likely pathogenic uncertain significance likely benign benign not provided total
Labcorp Genetics (formerly Invitae), Labcorp 162 40 1436 1443 121 0 3202
Illumina Laboratory Services, Illumina 0 2 369 49 114 0 534
Fulgent Genetics, Fulgent Genetics 15 66 194 51 6 0 332
Baylor Genetics 31 132 156 0 0 0 319
OMIM 269 0 0 0 0 0 269
Genome-Nilou Lab 0 1 5 2 102 0 110
Natera, Inc. 7 8 23 20 15 0 73
Revvity Omics, Revvity 9 11 47 1 0 0 68
Wong Mito Lab, Molecular and Human Genetics, Baylor College of Medicine 1 13 19 10 11 0 54
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute 17 8 18 1 0 0 44
Neuberg Centre For Genomic Medicine, NCGM 2 14 28 0 0 0 44
Women's Health and Genetics/Laboratory Corporation of America, LabCorp 26 17 0 0 0 0 43
Institute of Human Genetics Munich, Klinikum Rechts Der Isar, TU München 22 20 0 0 0 0 42
3billion, Medical Genetics 4 8 14 5 0 0 31
Mendelics 11 5 4 1 8 0 29
Genomic Medicine Center of Excellence, King Faisal Specialist Hospital and Research Centre 2 8 18 0 0 0 28
Centre for Mendelian Genomics, University Medical Centre Ljubljana 6 5 8 1 2 0 22
GenomeConnect, ClinGen 0 0 0 0 0 19 19
Houlden Lab, UCL Institute of Neurology 1 12 4 0 0 0 17
Genomic Research Center, Shahid Beheshti University of Medical Sciences 4 1 11 0 0 0 16
SIB Swiss Institute of Bioinformatics 4 6 6 0 0 0 16
Laboratoire de Génétique Moléculaire Institut de Recherche Necker Enfants Malades, CHU Paris - Hôpital Necker-Enfants Malades 15 1 0 0 0 0 16
Institute of Human Genetics, University of Leipzig Medical Center 3 4 5 0 0 0 12
New York Genome Center 0 3 9 0 0 0 12
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories 0 0 1 1 9 0 11
Undiagnosed Diseases Network, NIH 3 4 4 0 0 0 11
Juno Genomics, Hangzhou Juno Genomics, Inc 1 6 3 0 0 0 10
Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein 3 3 4 0 0 0 10
Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard 0 3 6 0 0 0 9
Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet 1 7 0 0 0 0 8
MGZ Medical Genetics Center 3 2 2 0 0 0 7
Institute for Human Genetics and Genomic Medicine, Uniklinik RWTH Aachen 1 0 5 0 0 0 6
Genetics and Molecular Pathology, SA Pathology 1 3 2 0 0 0 6
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine 3 2 0 0 0 0 5
Mayo Clinic Laboratories, Mayo Clinic 0 0 5 0 0 0 5
Clinical Genomics Laboratory, Washington University in St. Louis 1 1 3 0 0 0 5
Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago 0 0 5 0 0 0 5
Biochemical Molecular Genetic Laboratory, King Abdulaziz Medical City 1 2 2 0 0 0 5
Kids Research, The Children's Hospital at Westmead 4 1 0 0 0 0 5
Laboratory of Inherited Metabolic Diseases, Research centre for medical genetics 1 2 2 0 0 0 5
DASA 2 3 0 0 0 0 5
Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center 0 4 0 0 0 0 4
Al Jalila Children’s Genomics Center, Al Jalila Childrens Speciality Hospital 0 3 0 1 0 0 4
Istanbul Faculty of Medicine, Istanbul University 3 1 0 0 0 0 4
Pediatric Department, Xiangya Hospital, Central South University 2 2 0 0 0 0 4
Neurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL) 3 1 0 0 0 0 4
UCLA Clinical Genomics Center, UCLA 0 3 0 0 0 0 3
Department of Molecular and Human Genetics, Baylor College of Medicine 2 0 1 0 0 0 3
Knight Diagnostic Laboratories, Oregon Health and Sciences University 1 1 1 0 0 0 3
Foundation for Research in Genetics and Endocrinology, FRIGE's Institute of Human Genetics 1 0 2 0 0 0 3
Lupski Lab, Baylor-Hopkins CMG, Baylor College of Medicine 3 0 0 0 0 0 3
Department of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences 2 1 0 0 0 0 3
Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India 0 2 1 0 0 0 3
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego 0 3 0 0 0 0 3
Phosphorus, Inc. 0 0 3 0 0 0 3
Institute of Pediatric Research, Children's Hospital of Soochow University, Soochow University 0 0 3 0 0 0 3
Diagnostics Services (NGS), CSIR - Centre For Cellular And Molecular Biology 0 1 2 0 0 0 3
Department of Medical Laboratory, Affiliated Hospital of Southwest Medical University 1 1 1 0 0 0 3
Suma Genomics 0 0 3 0 0 0 3
Newman Lab, University of Manchester 0 2 1 0 0 0 3
Institute of Human Genetics, University of Goettingen 0 0 2 0 0 0 2
Institute of Human Genetics, Cologne University 0 0 2 0 0 0 2
Randwick Genomics Laboratory, Prince of Wales Hospital Sydney, Australia, New South Wales Health Pathology 0 2 0 0 0 0 2
Agnes Ginges Centre for Molecular Cardiology, Centenary Institute 0 0 2 0 0 0 2
Division of Human Genetics, Children's Hospital of Philadelphia 1 0 1 0 0 0 2
University of Washington Center for Mendelian Genomics, University of Washington 0 2 0 0 0 0 2
Baylor-Hopkins Center for Mendelian Genomics, Johns Hopkins University School of Medicine 2 0 0 0 0 0 2
Center For Human Genetics And Laboratory Diagnostics, Dr. Klein, Dr. Rost And Colleagues 1 1 0 0 0 0 2
Daryl Scott Lab, Baylor College of Medicine 0 1 1 0 0 0 2
Equipe Genetique des Anomalies du Developpement, Université de Bourgogne 0 2 0 0 0 0 2
Molecular Diagnostics Laboratory, M Health Fairview: University of Minnesota 1 1 0 0 0 0 2
Department Of Genetics, Sultan Qaboos University Hospital, Sultan Qaboos University 1 0 1 0 0 0 2
Institute of Human Genetics, Heidelberg University 2 0 0 0 0 0 2
Johns Hopkins Genomics, Johns Hopkins University 0 0 1 0 1 0 2
Genetics Laboratory - UDIAT Centre Diagnòstic, Hospital Universitari Parc Tauli 0 0 2 0 0 0 2
Myelin Disorders Clinic-Children's Medical Center/Medical Genetics Lab-Tarbiat Modares University, Children's Medical Center, Pediatrics Center of Excellence, 0 0 2 0 0 0 2
Pittsburgh Clinical Genomics Laboratory, University of Pittsburgh Medical Center 0 0 2 0 0 0 2
Department of Pediatrics, Salzburger Landeskliniken & Paracelsus Medical University 2 0 0 0 0 0 2
Lifecell International Pvt. Ltd 1 1 0 0 0 0 2
Rare Diseases Genetics and Genomics, Islamia College Peshawar 2 0 0 0 0 0 2
Biomedical Genomics and Oncogenetics Laboratory, Institut Pasteur de Tunis, University Tunis El Manar 0 1 1 0 0 0 2
Genomics England Pilot Project, Genomics England 0 2 0 0 0 0 2
Diagnostic and Treatment Unit for Congenital Metabolic Diseases, Hopital Clínico Universitario de Santiago de Compostela (CHUS) 1 0 1 0 0 0 2
Breakthrough Genomics, Breakthrough Genomics 0 2 0 0 0 0 2
Dept Of Pediatric Neurology, First Hospital Of Jilin University 0 0 2 0 0 0 2
Genetic Services Laboratory, University of Chicago 1 0 0 0 0 0 1
Centogene AG - the Rare Disease Company 0 1 0 0 0 0 1
Centre for Inherited Metabolic Diseases, Karolinska University Hospital 1 0 0 0 0 0 1
Intergen, Intergen Genetics and Rare Diseases Diagnosis Center 0 1 0 0 0 0 1
GeneReviews 0 0 0 0 0 1 1
Department of Human Genetics, McGill University 1 0 0 0 0 0 1
Centre of Medical Genetics, University of Antwerp 1 0 0 0 0 0 1
HudsonAlpha Institute for Biotechnology, HudsonAlpha Institute for Biotechnology 0 0 1 0 0 0 1
Hadassah Hebrew University Medical Center 0 1 0 0 0 0 1
Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust 1 0 0 0 0 0 1
Gene Discovery Core-Manton Center, Boston Children's Hospital 1 0 0 0 0 0 1
Soonchunhyang University Bucheon Hospital, Soonchunhyang University Medical Center 0 0 1 0 0 0 1
Institute of Human Genetics, University Hospital of Duesseldorf 0 0 1 0 0 0 1
Center for Molecular Medicine, Children’s Hospital of Fudan University 1 0 0 0 0 0 1
GeneID Lab - Advanced Molecular Diagnostics 1 0 0 0 0 0 1
Génétique des Maladies du Développement, Hospices Civils de Lyon 0 1 0 0 0 0 1
UNC Molecular Genetics Laboratory, University of North Carolina at Chapel Hill 0 1 0 0 0 0 1
Genomic Medicine Lab, University of California San Francisco 0 0 1 0 0 0 1
Breda Genetics srl 0 0 1 0 0 0 1
Biochemistry Laboratory of CDMU, Chengde Medical University 0 1 0 0 0 0 1
Reproductive Health Research and Development, BGI Genomics 1 0 0 0 0 0 1
Zotz-Klimas Genetics Lab, MVZ Zotz Klimas 0 1 0 0 0 0 1
Unidad de Genómica Garrahan, Hospital de Pediatría Garrahan 0 0 1 0 0 0 1
The Molecular Genetic and Pathologic Diagnosis Center of Neuromuscular Disorder, Children's Hospital of Fudan University 0 1 0 0 0 0 1
Center of Excellence for Medical Genomics, Chulalongkorn University 0 1 0 0 0 0 1
Clinical Genomics Laboratory, Stanford Medicine 0 1 0 0 0 0 1
ENT and Head and Neck Research Center and Department, The Five Senses Health Institute, Iran University of Medical Sciences 1 0 0 0 0 0 1
Pars Genome Lab 0 0 0 0 1 0 1
Precision Medicine Center, Zhengzhou University 0 1 0 0 0 0 1
Department of Medical and Molecular Genetics, Dongguan Institute of Pediatrics 1 0 0 0 0 0 1
GenomeConnect - Invitae Patient Insights Network 0 0 0 0 0 1 1
Institute of Human Genetics, Clinical Exome/Genome Diagnostics Group, University Hospital Bonn 0 0 1 0 0 0 1
Molecular Genetics, Royal Melbourne Hospital 0 0 0 0 1 0 1
GenomeConnect - Brain Gene Registry 0 0 0 0 0 1 1
Pediatric/Medical Genetics, Ministry of Health, Qatif Central Hospital 1 0 0 0 0 0 1
Rare Genetic Disease Lab, Dept of Zoology, Government Postgraduate College Dargai Malakand, Higher Education Govt. of Khyber Pakhtunkhwa 0 1 0 0 0 0 1
MVZ Medizinische Genetik Mainz 0 0 1 0 0 0 1
Laboratory of Biochemistry, Assistance Publique Hopitaux de Paris - Bicetre Hospital 1 0 0 0 0 0 1
Royal Medical Services, Bahrain Defence Force Hospital 0 0 1 0 0 0 1
Igenomix - Part of Vitrolife Group, Igenomix 0 1 0 0 0 0 1

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