ClinVar Miner

Variants from Institute of Molecular and Cell Biology, University of Tartu

Location: Estonia — Primary collection method: case-control
Minimum submission review status: Collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic likely pathogenic uncertain significance likely benign benign not provided total
0 0 0 0 0 135 135

Gene and significance breakdown #

Total genes and gene combinations: 284
Download table as spreadsheet
Gene or gene combination not provided total
​intergenic 12 12
DISC1, LINC00582, TSNAX-DISC1 3 3
MTUS1 3 3
AADAC, AADACL2 2 2
ABCC4 2 2
CAT 2 2
CCDC3, LOC107275223 2 2
CFHR4 2 2
CNOT2 2 2
CNTN5 2 2
CTNNA3 2 2
ERBB4 2 2
GOLPH3, PDZD2 2 2
HPN 2 2
IMMP2L 2 2
KIF26B 2 2
LINC01237, LINC01238, LINC01880, LINC01881, LOC285097 2 2
LINC01237, LINC01880, LINC01881, LOC285097 2 2
LINC02055 2 2
LOC116268429, LOC116268430, LOC116268431, SLC2A14, SLC2A3 2 2
LOC730100 2 2
NKAIN2 2 2
NLGN1 2 2
PIEZO2 2 2
ABCD3, F3, MIR12133, SLC44A3 1 1
ABR, BHLHA9, TRARG1 1 1
ACACB 1 1
ACSL3 1 1
ACY3, ALDH3B2, C11orf72, NDUFV1, NUDT8, TBX10 1 1
ADGRG7, TFG 1 1
AGAP10, AGAP4, ANXA8L1, FAM25E, GPRIN2, NPY4R, SYT15, WASHC2C 1 1
AGAP10, ANXA8L1, NPY4R 1 1
AGBL4, AGBL4-IT1 1 1
AGO1 1 1
AGPAT4, MAP3K4 1 1
AKAP12 1 1
AMY1A, AMY2A 1 1
ANAPC4, PI4K2B, SEPSECS, ZCCHC4 1 1
ANKS1B 1 1
ANO9, PKP3, SIGIRR 1 1
ANTXR2 1 1
AOC1 1 1
APBA1 1 1
APOBEC3D, APOBEC3F 1 1
ARHGAP11B, CHRFAM7A, GOLGA8H, GOLGA8J, GOLGA8Q, GOLGA8R, GOLGA8T, LINC02249, LOC100996413, LOC102725021, LOC106736464, LOC106736465, LOC106736468, LOC106736476, LOC106736480, LOC106783506 1 1
ARHGAP24 1 1
ARID4A 1 1
ARL17A, ARL17B, KANSL1, LOC112533643, LRRC37A 1 1
ARL17B, KANSL1 1 1
ARL17B, KANSL1, LRRC37A 1 1
ARPP21 1 1
ASCL3 1 1
ATAD3B, ATAD3C 1 1
ATP8B3 1 1
B4GALNT4, IFITM1, IFITM2, IFITM3, IFITM5, LOC116216126, NLRP6, PGGHG, PKP3 1 1
BAIAP2L1, BRI3 1 1
BAZ2B, LOC643072 1 1
BBS9 1 1
BPIFA3 1 1
C2orf80 1 1
C8orf48, DLC1, LOC102725080 1 1
CACNA1C 1 1
CACNA1I 1 1
CASP12 1 1
CATSPER2, STRC 1 1
CBWD1, DOCK8, FOXD4, LINC01388, LOC110120718, PGM5P3 1 1
CCDC102B 1 1
CCDC178 1 1
CD160, PDZK1, RNF115 1 1
CDCA7L, DNAH11 1 1
CDK11A, SLC35E2A 1 1
CDK11A, SLC35E2A, SLC35E2B 1 1
CELA2A 1 1
CELA2A, CELA2B 1 1
CFAP46, INPP5A, NKX6-2 1 1
CHRM3 1 1
CNTN6, LINC01266 1 1
CNTNAP2 1 1
COL21A1 1 1
CRIP1, IGH, IGHA1, IGHA2, IGHD, IGHD3-3, IGHE, IGHG1, IGHG2, IGHG3, IGHG4, IGHM, IGHV3-23, TEDC1, TMEM121 1 1
CRTAM 1 1
CSMD1 1 1
CTDSPL 1 1
CTNS, EMC6, P2RX5, P2RX5-TAX1BP3, SHPK, TAX1BP3, TRPV1 1 1
CYB5R4, LOC113175019, LOC116183065, RIPPLY2 1 1
CYP2A6, LOC110673974 1 1
CYP2C19, LOC110599570, LOC111982881 1 1
CYP2E1, LOC110599585, MTG1, SPRN, SYCE1 1 1
CYP2E1, LOC110599585, SYCE1 1 1
DGCR5, DGCR6, DGCR9, FAM230F, HSERVPRODH, PRODH 1 1
DHRS4L1, DHRS4L2 1 1
DNAH3, LYRM1 1 1
DNAJB13, PAAF1, UCP2 1 1
DOCK4 1 1
DOCK8 1 1
DOCK8, KANK1 1 1
DOK6 1 1
DPH6 1 1
DPH6-DT 1 1
DPY19L2, LOC108720144 1 1
DTX2, UPK3B 1 1
EHD4, LOC105370792, SPTBN5 1 1
ELOVL6, LOC116158506 1 1
EPHA3 1 1
EYS 1 1
FAM110C 1 1
FAM126B, NDUFB3 1 1
FAM20A 1 1
FCGR2A, HSPA6, TRG-GCC2-1, TRG-TCC2-6, TRL-CAG1-6 1 1
FGF12 1 1
FKBP15, SLC31A1 1 1
FPR2, FPR3, ZNF350, ZNF432, ZNF577, ZNF613, ZNF614, ZNF615, ZNF616, ZNF649, ZNF841 1 1
FRG1 1 1
FRG2C, LINC00960, LINC02018, LOC112935961, MIR1324 1 1
GALC 1 1
GALNT13 1 1
GK2, LINC00989, LINC01088, NAA11 1 1
GOLGA6L6, OR4M2, OR4N4, POTEB, POTEB2 1 1
GPR35 1 1
GRID1 1 1
GRID2 1 1
GRIK4 1 1
GRIN2A 1 1
GRK3, LRP5L 1 1
GRM5 1 1
GTF2F2, KCTD4, LOC101929259, TPT1 1 1
HCG26, HCP5, LINC01149, MICA, MICB-DT 1 1
HCG4B 1 1
HNRNPCL1, PRAMEF11 1 1
HRG 1 1
IGH, IGHA1, IGHA2, IGHD, IGHD3-3, IGHE, IGHG1, IGHG2, IGHG3, IGHG4, IGHM, IGHV3-23 1 1
IGH, IGHD3-3, IGHV3-23 1 1
ITSN1 1 1
IZUMO2, KCNC3, LOC111811967, LOC400710, MYH14, NAPSA, NR1H2, POLD1, SNAR-A10, SNAR-A11, SNAR-A14, SNAR-A4, SNAR-A5, SNAR-A6, SNAR-A7, SNAR-A8, SNAR-A9, SNAR-B1, SNAR-B2, SNAR-D, VRK3, ZNF473 1 1
JADE1, SCLT1 1 1
JRKL, LINC02737 1 1
KCCAT333 1 1
KIF23, LOC145694, PAQR5 1 1
KLHL1 1 1
KMT2C, LINC01003 1 1
KNG1 1 1
KRT6C 1 1
LINC00276 1 1
LINC00343 1 1
LINC00621 1 1
LINC00659, NTSR1 1 1
LINC00871 1 1
LINC01192 1 1
LINC01216 1 1
LINC01250 1 1
LINC01322 1 1
LINC01566, LOC112268173, LOC112441448 1 1
LINC01722 1 1
LINC01826 1 1
LINC01903, LOC643542 1 1
LINC01950 1 1
LINC01957, LOC101927078 1 1
LINC02018, LOC112935961 1 1
LINC02089, LINC02876 1 1
LINC02112 1 1
LINC02208 1 1
LINC02267 1 1
LINC02316, LINC02328 1 1
LINC02415 1 1
LINC02510, LINC02511 1 1
LINC02706, LINC02714, LOC283177 1 1
LINGO2 1 1
LMNTD1 1 1
LOC100133091, LOC108228209, POMZP3, SPDYE16, UPK3B 1 1
LOC100505915, LOC112340378, MIR3180-4, MIR6511B2, MPV17L, NPIPA5, PDXDC1, RRN3 1 1
LOC101928924, OCLN 1 1
LOC101929572, OR11H12, OR11H2, OR4K1, OR4K13, OR4K14, OR4K15, OR4K17, OR4K2, OR4K5, OR4L1, OR4M1, OR4N2, OR4N5, OR4Q3, POTEG, POTEM 1 1
LOC101929572, OR11H12, OR11H2, OR4K1, OR4K2, OR4K5, OR4M1, OR4N2, OR4Q3, POTEG, POTEM 1 1
LOC108281140, MEGF6 1 1
LOC108942766, LOC116268429, LOC116268430, LOC116268431, NANOG, SLC2A14, SLC2A3 1 1
LOC108942766, LOC116268429, NANOG, SLC2A14, SLC2A3 1 1
LOC110120572 1 1
LOC110673974 1 1
LOC111429611 1 1
LOC111828495, SAFB2, TINCR 1 1
LOC111828512, MOGAT1 1 1
LOC112340392, SULT1A1, SULT1A2 1 1
LOC112533660, PRKCA 1 1
LOC116183048, LOC116183049, TRI-AAT2-1, TRI-AAT8-1, TRR-ACG2-4, TRS-CGA3-1, TRT-AGT2-2, TRV-AAC4-1 1 1
LOC116276448 1 1
LOC284344, PSG4, PSG5, PSG9 1 1
LRP1B 1 1
LRP5L 1 1
LRRC69 1 1
MACROD2 1 1
MAF 1 1
MAP4K3 1 1
MCTP1 1 1
MED13 1 1
MGAM 1 1
MGC4859 1 1
MIR3910-1, MIR3910-2 1 1
MNDA, OR6N1 1 1
MRGPRX1 1 1
MSR1 1 1
MTR 1 1
MYO1D 1 1
NAIP 1 1
NEDD4L 1 1
NEFL, NEFM 1 1
NHSL1 1 1
NIPA1 1 1
NPIPB5 1 1
NRCAM 1 1
NRDE2 1 1
NRG3 1 1
NRXN1 1 1
OPRM1 1 1
OR2J2 1 1
OR4C12 1 1
OR4D6, OR5A1 1 1
OR4F15, OR4F6 1 1
PCDH15 1 1
PCF11 1 1
PLCH2 1 1
PRKCA 1 1
PRKG1 1 1
PSG1, PSG11, PSG2, PSG4, PSG5, PSG6, PSG7 1 1
PSG1, PSG11, PSG2, PSG4, PSG5, PSG6, PSG7, PSG9 1 1
PSG1, PSG11, PSG6, PSG7 1 1
PSG1, PSG6, PSG7 1 1
PSG4, PSG5 1 1
PTPRD 1 1
PWRN2 1 1
PWRN3 1 1
QRFPR 1 1
RBFOX3 1 1
REV1 1 1
RFX3 1 1
RHD, RSRP1 1 1
RLN1, RLN2 1 1
RTP5 1 1
SCARB1 1 1
SDK1 1 1
SFMBT1 1 1
SGCD 1 1
SIK1 1 1
SLC10A2 1 1
SLC15A5 1 1
SLC26A7 1 1
SLC35F2 1 1
SLCO1B1 1 1
SLFN11, SLFN12, SLFN13 1 1
SNHG14, SNORD115-4, SNORD115-5, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115@ 1 1
SNTG1 1 1
SOX11 1 1
SPATA45 1 1
SPINT4, WFDC3 1 1
STAG1 1 1
STXBP5 1 1
SULT1A1 1 1
TACSTD2 1 1
TAFA2 1 1
TCF7L2 1 1
TM4SF20 1 1
TMEM231 1 1
TMEM72 1 1
TMTC2 1 1
TMX4 1 1
TOP3B 1 1
TP53TG3, TP53TG3B, TP53TG3C 1 1
TP53TG3, TP53TG3B, TP53TG3C, TP53TG3D 1 1
TPTE 1 1
TRA 1 1
TRB 1 1
TRH-GTG2-1 1 1
TRIM72 1 1
TRPM3 1 1
TUSC3 1 1
URGCP, URGCP-MRPS24 1 1
VIPR2 1 1
VWDE 1 1
ZDHHC11 1 1
ZNF385D 1 1
ZNF595, ZNF718 1 1
ZNF716 1 1
ZNF804B 1 1
ZRANB3 1 1
ZSWIM5 1 1

Condition and significance breakdown #

Total conditions: 5
Download table as spreadsheet
Condition not provided total
Normal pregnancy 58 58
Gestational diabetes mellitus uncontrolled 38 38
Preeclampsia 34 34
Large for gestational age 29 29
Small for gestational age 17 17

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