Variants from Liquid Biopsy and Cancer Interception Group, Pfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research

Minimum submission review status:		Collection method:
Minimum conflict level: Report conflict between different conditions
Gene type: Distinguish antisense genes from sense genes
Show significances as they were submitted (without aggregation into standard terms)
		ClinVar version:

If a variant has more than one submission, it may be counted in more than one significance column. If this is the case, the total number of variants will be less than the sum of the other cells.

pathogenic	likely pathogenic	uncertain significance	likely benign	benign	risk factor	total
23	1	127	6	8	1	165

Gene and significance breakdown #

Total genes and gene combinations: 59

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Gene or gene combination	pathogenic	likely pathogenic	uncertain significance	likely benign	benign	risk factor	total
MUC5AC	0	0	10	1	0	0	11
TP53	6	1	4	0	0	0	11
NLRP3	0	0	9	0	0	0	9
EGFR	2	0	5	0	0	0	7
FLT1	0	0	6	0	1	0	7
ROS1	1	0	4	0	1	0	6
ADAM19	0	0	5	0	0	0	5
ADAMTSL3	0	0	5	0	0	0	5
BRCA1	1	0	4	0	0	0	5
MLH1	0	0	5	0	0	0	5
RIN3	0	0	5	0	0	0	5
ATM, C11orf65	2	0	2	0	0	0	4
BRCA2	2	0	2	0	0	0	4
FOXP2	0	0	4	0	0	0	4
RB1	2	0	1	0	1	0	4
TLR4	0	0	2	2	0	0	4
ADGRG6	0	0	3	0	0	0	3
AKT1	0	0	2	0	1	0	3
CD163	0	0	3	0	0	0	3
DDR2	0	0	2	0	1	0	3
FOXP4	0	0	3	0	0	0	3
HTR4	0	0	1	1	1	0	3
PTCH1	0	0	2	1	0	0	3
APC	0	0	2	0	0	0	2
ATM	2	0	0	0	0	0	2
CHEK2	1	0	1	0	0	0	2
CHRNA3	0	0	2	0	0	0	2
CHRNA3, CHRNA5	0	0	2	0	0	0	2
FAM13A	1	0	1	0	0	0	2
FGF10	1	0	1	0	0	0	2
IREB2	0	0	2	0	0	0	2
LOC110006318, STK11	0	0	2	0	0	0	2
NKX2-1, SFTA3	0	0	1	0	1	0	2
RAD50	0	0	2	0	0	0	2
RAD51C	1	0	0	0	0	1	2
ALK	0	0	1	0	0	0	1
ALX1	0	0	1	0	0	0	1
CHRNA5	0	0	1	0	0	0	1
CHRNB4	0	0	1	0	0	0	1
EGR1, LOC126807524	0	0	1	0	0	0	1
FLT1, LOC124849303	0	0	1	0	0	0	1
FLT1, LOC130009460	0	0	1	0	0	0	1
FOXP4, LOC129996415	0	0	1	0	0	0	1
FOXP4, LOC129996416	0	0	1	0	0	0	1
FPR2	0	0	1	0	0	0	1
LOC126860749, TLR4	0	0	1	0	0	0	1
LOC126861112, MUC5AC	0	0	1	0	0	0	1
LOC130002133, PTCH1	0	0	1	0	0	0	1
MSH2	0	0	1	0	0	0	1
MSH6	0	0	1	0	0	0	1
NBN	0	0	1	0	0	0	1
PALB2	1	0	0	0	0	0	1
PITX2	0	0	1	0	0	0	1
PTEN	0	0	1	1	0	0	1
SERPINA1	0	0	1	0	0	0	1
SLC22A18	0	0	1	0	0	0	1
STK11	0	0	0	0	1	0	1
TET2	0	0	1	0	0	0	1
TGFB2	0	0	1	0	0	0	1

Condition and significance breakdown #

Total conditions: 5

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Condition	pathogenic	likely pathogenic	uncertain significance	likely benign	benign	risk factor	total
Lung adenocarcinoma	9	1	83	4	4	0	101
Squamous cell carcinoma	4	0	29	2	4	0	39
Familial cancer of breast	6	0	7	0	0	0	13
Breast-ovarian cancer, familial, susceptibility to, 2	2	0	5	0	0	0	7
Breast-ovarian cancer, familial, susceptibility to, 1	2	0	3	0	0	1	6

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