ClinVar Miner

Variants in gene FOXP1 with conflicting interpretations

See also:
Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
707 50 0 27 23 1 5 50

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign association
pathogenic 0 6 2 0 0 0
likely pathogenic 6 0 4 1 0 0
uncertain significance 2 4 0 19 6 0
likely benign 0 1 19 0 21 0
benign 0 0 6 21 0 1
association 0 0 0 0 1 0

All variants with conflicting interpretations #

Total variants: 50
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_001349338.3(FOXP1):c.1652+403A>G rs76145927 0.00298
NM_001349338.3(FOXP1):c.1146+19C>G rs140060227 0.00228
NM_001349338.3(FOXP1):c.181-13T>G rs139264797 0.00220
NM_001349338.3(FOXP1):c.1702C>T (p.Pro568Ser) rs147674680 0.00185
NM_001349338.3(FOXP1):c.1709A>G (p.Asn570Ser) rs140161845 0.00140
NM_001349338.3(FOXP1):c.643C>G (p.Pro215Ala) rs146606219 0.00118
NM_001349338.3(FOXP1):c.1413A>G (p.Ala471=) rs144080925 0.00088
NM_001349338.3(FOXP1):c.1825G>A (p.Ala609Thr) rs147537388 0.00067
NM_001349338.3(FOXP1):c.1890-5T>C rs187666567 0.00059
NM_001349338.3(FOXP1):c.1333G>A (p.Val445Met) rs147756430 0.00044
NM_001349338.3(FOXP1):c.1428+9A>G rs373976764 0.00036
NM_001349338.3(FOXP1):c.1762G>A (p.Ala588Thr) rs202173892 0.00034
NM_001349338.3(FOXP1):c.123G>A (p.Thr41=) rs201155996 0.00030
NM_001349338.3(FOXP1):c.855T>G (p.Thr285=) rs141007926 0.00029
NM_001349338.3(FOXP1):c.1217C>G (p.Thr406Ser) rs200355554 0.00016
NM_001349338.3(FOXP1):c.44C>T (p.Ala15Val) rs532329866 0.00015
NM_001349338.3(FOXP1):c.13T>C (p.Ser5Pro) rs762898505 0.00012
NM_001349338.3(FOXP1):c.1135G>A (p.Ala379Thr) rs149759021 0.00008
NM_001349338.3(FOXP1):c.107G>A (p.Arg36Gln) rs200643313 0.00005
NM_001349338.3(FOXP1):c.1233C>T (p.Thr411=) rs147995584 0.00004
NM_001349338.3(FOXP1):c.1359G>A (p.Ala453=) rs766683691 0.00004
NM_001349338.3(FOXP1):c.1383C>T (p.Asn461=) rs372403441 0.00004
NM_001349338.3(FOXP1):c.1344G>A (p.Ser448=) rs143503790 0.00003
NM_001349338.3(FOXP1):c.1902C>T (p.His634=) rs749771909 0.00003
NM_001349338.3(FOXP1):c.316G>A (p.Val106Ile) rs755709669 0.00002
NM_001349338.3(FOXP1):c.1328A>G (p.Tyr443Cys) rs727503936 0.00001
NM_001349338.3(FOXP1):c.1964C>T (p.Ala655Val) rs762475508 0.00001
NM_001349338.3(FOXP1):c.321C>T (p.Ile107=) rs747108471 0.00001
NM_001349338.3(FOXP1):c.*1231_*1235dup rs373349025
NM_001349338.3(FOXP1):c.*1669dup rs886058842
NM_001349338.3(FOXP1):c.*3192del rs535202716
NM_001349338.3(FOXP1):c.*3391TG[10] rs143202281
NM_001349338.3(FOXP1):c.*4029del rs753706183
NM_001349338.3(FOXP1):c.1146+10_1146+12del rs199543140
NM_001349338.3(FOXP1):c.1147-9dup rs774665288
NM_001349338.3(FOXP1):c.1162A>T (p.Ser388Cys)
NM_001349338.3(FOXP1):c.1240_1241del (p.Leu414fs) rs1064793130
NM_001349338.3(FOXP1):c.1321_1324del (p.Asp441fs)
NM_001349338.3(FOXP1):c.142G>C (p.Ala48Pro)
NM_001349338.3(FOXP1):c.1540C>T (p.Arg514Cys) rs869025203
NM_001349338.3(FOXP1):c.1541G>A (p.Arg514His) rs797045586
NM_001349338.3(FOXP1):c.1568T>C (p.Phe523Ser) rs1559602593
NM_001349338.3(FOXP1):c.1574G>A (p.Arg525Gln) rs1553663084
NM_001349338.3(FOXP1):c.159C>A (p.His53Gln) rs777378675
NM_001349338.3(FOXP1):c.1652+5G>A rs794727216
NM_001349338.3(FOXP1):c.184C>T (p.Leu62Phe) rs538443416
NM_001349338.3(FOXP1):c.511-3C>A rs778983019
NM_001349338.3(FOXP1):c.665-7_665-4del rs1453915867
NM_001349338.3(FOXP1):c.728A>G (p.Glu243Gly)

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