ClinVar Miner

Variants in gene HMGCS2 with conflicting interpretations

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Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
227 21 0 10 8 0 3 20

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 5 2 0 0
likely pathogenic 5 0 1 0 0
uncertain significance 2 1 0 5 4
likely benign 0 0 5 0 5
benign 0 0 4 5 0

All variants with conflicting interpretations #

Total variants: 20
Download table as spreadsheet
HGVS dbSNP gnomAD frequency
NM_005518.4(HMGCS2):c.858C>T (p.Ser286=) rs1992376 0.00546
NM_005518.4(HMGCS2):c.1419G>A (p.Lys473=) rs142776952 0.00228
NM_005518.4(HMGCS2):c.270G>A (p.Gln90=) rs41302817 0.00216
NM_005518.4(HMGCS2):c.1522G>A (p.Val508Ile) rs76773981 0.00207
NM_005518.4(HMGCS2):c.174C>T (p.Ala58=) rs138739620 0.00153
NM_005518.4(HMGCS2):c.634G>A (p.Gly212Arg) rs137852638 0.00026
NM_005518.4(HMGCS2):c.570C>T (p.Ala190=) rs201735169 0.00024
NM_005518.4(HMGCS2):c.851-14G>A rs188523700 0.00016
NM_005518.4(HMGCS2):c.1420+13T>C rs771878586 0.00006
NM_005518.4(HMGCS2):c.1270C>T (p.Arg424Ter) rs137852637 0.00004
NM_005518.4(HMGCS2):c.181_182insCCAATATGGCCCTGGAGGCCAA (p.Val61fs) rs1553241079 0.00004
NM_005518.4(HMGCS2):c.1236T>C (p.Tyr412=) rs773364048 0.00002
NM_005518.4(HMGCS2):c.111T>C (p.Ser37=) rs200675569 0.00001
NM_005518.4(HMGCS2):c.1499G>A (p.Arg500His) rs137852639 0.00001
NM_005518.4(HMGCS2):c.160G>A (p.Val54Met) rs28937320 0.00001
NM_005518.4(HMGCS2):c.1502G>C (p.Arg501Pro) rs372079931
NM_005518.4(HMGCS2):c.334C>T (p.Arg112Trp)
NM_005518.4(HMGCS2):c.621C>T (p.Pro207=) rs886045207
NM_005518.4(HMGCS2):c.726C>G (p.Tyr242Ter) rs145838142
NM_005518.4(HMGCS2):c.862C>A (p.Arg288=) rs142637231

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