ClinVar Miner

Variants in gene KCNT1 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission Variants with at least 2 submissions and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any kind of conflict
373 84 0 54 51 0 5 100

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 3 4 1 0
likely pathogenic 3 0 1 0 0
uncertain significance 4 1 0 50 10
likely benign 1 0 50 0 51
benign 0 0 10 51 0

All variants with conflicting interpretations #

Total variants: 100
Download table as spreadsheet
HGVS dbSNP
NM_020822.2(KCNT1):c.-1C>A rs149383208
NM_020822.2(KCNT1):c.1008C>T (p.Cys336=) rs540422455
NM_020822.2(KCNT1):c.104C>T (p.Ala35Val) rs772080195
NM_020822.2(KCNT1):c.1066C>T (p.Arg356Trp) rs752514808
NM_020822.2(KCNT1):c.1104G>A (p.Ala368=) rs146032445
NM_020822.2(KCNT1):c.1134C>T (p.Val378=) rs149960236
NM_020822.2(KCNT1):c.1182C>T (p.Tyr394=) rs372491855
NM_020822.2(KCNT1):c.1337+7G>A rs374975940
NM_020822.2(KCNT1):c.1338-3C>T rs369562243
NM_020822.2(KCNT1):c.136C>T (p.Leu46Phe) rs869312682
NM_020822.2(KCNT1):c.1394C>T (p.Thr465Met) rs539139475
NM_020822.2(KCNT1):c.1422C>T (p.Arg474=) rs372250372
NM_020822.2(KCNT1):c.146C>G (p.Thr49Ser) rs200137341
NM_020822.2(KCNT1):c.1511-4G>A rs368480443
NM_020822.2(KCNT1):c.1533G>A (p.Glu511=) rs151080601
NM_020822.2(KCNT1):c.1546A>G (p.Met516Val) rs886041691
NM_020822.2(KCNT1):c.1614C>T (p.Arg538=) rs368876173
NM_020822.2(KCNT1):c.1620-15_1620-5dupCGCCCTGGCCC rs761464076
NM_020822.2(KCNT1):c.1626A>G (p.Gly542=) rs537431085
NM_020822.2(KCNT1):c.1628A>G (p.Gln543Arg) rs200173000
NM_020822.2(KCNT1):c.1718G>A (p.Arg573His) rs575162600
NM_020822.2(KCNT1):c.1726G>A (p.Glu576Lys) rs147306623
NM_020822.2(KCNT1):c.1749G>A (p.Ala583=) rs17038714
NM_020822.2(KCNT1):c.1776C>T (p.Gly592=) rs769406687
NM_020822.2(KCNT1):c.1777G>A (p.Val593Met) rs779590747
NM_020822.2(KCNT1):c.1879A>G (p.Ile627Val) rs143355299
NM_020822.2(KCNT1):c.1899G>A (p.Ser633=) rs371135108
NM_020822.2(KCNT1):c.1928G>A (p.Arg643Gln) rs141281093
NM_020822.2(KCNT1):c.1995C>T (p.Ile665=) rs757811625
NM_020822.2(KCNT1):c.2008+10G>C rs752453368
NM_020822.2(KCNT1):c.2030A>G (p.Gln677Arg) rs1060505000
NM_020822.2(KCNT1):c.2034C>T (p.Gly678=) rs369983077
NM_020822.2(KCNT1):c.2052G>A (p.Thr684=) rs376314779
NM_020822.2(KCNT1):c.2070C>T (p.Gly690=) rs370155559
NM_020822.2(KCNT1):c.2142G>A (p.Leu714=) rs370580872
NM_020822.2(KCNT1):c.2166G>A (p.Leu722=) rs374347802
NM_020822.2(KCNT1):c.2210C>T (p.Thr737Met) rs61744696
NM_020822.2(KCNT1):c.2214G>A (p.Pro738=) rs142424896
NM_020822.2(KCNT1):c.2217G>A (p.Ser739=) rs143678590
NM_020822.2(KCNT1):c.2235C>T (p.Ser745=) rs146810749
NM_020822.2(KCNT1):c.2280C>G (p.Ile760Met) rs370521183
NM_020822.2(KCNT1):c.2321C>T (p.Ala774Val) rs777479133
NM_020822.2(KCNT1):c.2376C>T (p.Asp792=) rs149028586
NM_020822.2(KCNT1):c.2427G>A (p.Thr809=) rs914428
NM_020822.2(KCNT1):c.2594+6G>A rs973179248
NM_020822.2(KCNT1):c.2594+7C>T rs545094921
NM_020822.2(KCNT1):c.2595-9C>T rs369966222
NM_020822.2(KCNT1):c.2619C>T (p.Gly873=) rs144659358
NM_020822.2(KCNT1):c.2674G>A (p.Glu892Lys) rs376757326
NM_020822.2(KCNT1):c.2691G>A (p.Ala897=) rs142642528
NM_020822.2(KCNT1):c.2729G>A (p.Arg910Gln) rs151272083
NM_020822.2(KCNT1):c.2794T>A (p.Phe932Ile) rs886044717
NM_020822.2(KCNT1):c.2841+10C>T rs765179799
NM_020822.2(KCNT1):c.2849G>A (p.Arg950Gln) rs886043455
NM_020822.2(KCNT1):c.285C>T (p.Asn95=) rs558966732
NM_020822.2(KCNT1):c.2882G>A (p.Arg961His) rs200694691
NM_020822.2(KCNT1):c.2892C>T (p.Phe964=) rs146904895
NM_020822.2(KCNT1):c.2943+6C>T rs28612938
NM_020822.2(KCNT1):c.2944-14_2944-7delCCCTCCCT rs55843930
NM_020822.2(KCNT1):c.2944-18_2944-7delCCCTCCCTCCCT rs55843930
NM_020822.2(KCNT1):c.2949C>T (p.Phe983=) rs764574987
NM_020822.2(KCNT1):c.2994G>A (p.Leu998=) rs143198263
NM_020822.2(KCNT1):c.3001A>G (p.Thr1001Ala) rs143780942
NM_020822.2(KCNT1):c.3039C>T (p.Thr1013=) rs148001061
NM_020822.2(KCNT1):c.3100G>A (p.Ala1034Thr) rs779961735
NM_020822.2(KCNT1):c.3147C>T (p.Ser1049=) rs765432746
NM_020822.2(KCNT1):c.3153G>A (p.Ser1051=) rs141802876
NM_020822.2(KCNT1):c.3157-8C>T rs371874401
NM_020822.2(KCNT1):c.3239G>T (p.Gly1080Val) rs200250181
NM_020822.2(KCNT1):c.3256G>A (p.Gly1086Arg) rs201156458
NM_020822.2(KCNT1):c.3281C>T (p.Thr1094Met) rs373041291
NM_020822.2(KCNT1):c.3289G>A (p.Gly1097Ser) rs199779214
NM_020822.2(KCNT1):c.3295C>T (p.Pro1099Ser) rs200642629
NM_020822.2(KCNT1):c.3312G>A (p.Leu1104=) rs149416418
NM_020822.2(KCNT1):c.333G>A (p.Ser111=) rs56008253
NM_020822.2(KCNT1):c.3380C>T (p.Ala1127Val) rs774589071
NM_020822.2(KCNT1):c.3387C>T (p.Ala1129=) rs372410150
NM_020822.2(KCNT1):c.3388G>A (p.Ala1130Thr) rs138421850
NM_020822.2(KCNT1):c.3390G>A (p.Ala1130=) rs77912754
NM_020822.2(KCNT1):c.3495C>T (p.Thr1165=) rs374429090
NM_020822.2(KCNT1):c.3501C>T (p.Tyr1167=) rs773575309
NM_020822.2(KCNT1):c.3555G>T (p.Pro1185=) rs144068763
NM_020822.2(KCNT1):c.3606C>T (p.Asp1202=) rs140628824
NM_020822.2(KCNT1):c.3632C>G (p.Ser1211Cys) rs752729337
NM_020822.2(KCNT1):c.3641G>A (p.Arg1214Gln) rs138282349
NM_020822.2(KCNT1):c.3681C>T (p.Pro1227=) rs149049198
NM_020822.2(KCNT1):c.3690C>T (p.Arg1230=) rs141521745
NM_020822.2(KCNT1):c.408C>T (p.Leu136=) rs370046449
NM_020822.2(KCNT1):c.474G>A (p.Ser158=) rs139076605
NM_020822.2(KCNT1):c.522G>A (p.Met174Ile) rs147551342
NM_020822.2(KCNT1):c.567G>A (p.Leu189=) rs372998864
NM_020822.2(KCNT1):c.59G>C (p.Gly20Ala) rs146292575
NM_020822.2(KCNT1):c.637G>A (p.Val213Ile) rs143536408
NM_020822.2(KCNT1):c.885G>A (p.Ala295=) rs142756900
NM_020822.2(KCNT1):c.942C>T (p.Thr314=) rs144766991
NM_020822.2(KCNT1):c.978A>G (p.Pro326=) rs61739517
NM_020822.2(KCNT1):c.981G>A (p.Ser327=) rs373317695
NM_020822.2(KCNT1):c.985C>T (p.Leu329=) rs147165522
NM_020822.2(KCNT1):c.99A>G (p.Gln33=) rs146152956
NM_020822.3(KCNT1):c.1421G>A (p.Arg474His) rs397515404

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