ClinVar Miner

Variants in gene LZTR1 with conflicting interpretations

Y axis minimum submission review status: Y axis collection method:
X axis minimum submission review status: X axis collection method:
Minimum conflict level:
Gene type:
ClinVar version:

If a variant has more than two submissions, it may have multiple conflicts and therefore be counted in more than one conflict column. If this is the case, the "Variants with any kind of conflict" cell will be less than the sum of the conflicted variants cells to its left.

Variants with only 1 submission per condition Variants with at least 2 submissions on the same condition and no conflicts Variants with a synonymous conflict
(e.g. benign vs non-pathogenic)
Variants with a confidence conflict
(e.g. benign vs likely benign)
Variants with a benign or likely benign vs uncertain conflict Variants with a category conflict
(e.g. benign vs affects)
Variants with a clinically significant conflict
(e.g. benign vs pathogenic)
Variants with any conflict
372 43 0 25 7 0 4 34

Significance breakdown #

In the table below, cells that correspond to a term paired with itself represent synonymous conflicts, i.e. variants that have been annotated with different terms that map to the same standard term. To compare the terms that were actually submitted, check the box in the filters section at the top of this page.

pathogenic likely pathogenic uncertain significance likely benign benign
pathogenic 0 2 1 0 0
likely pathogenic 2 0 3 0 0
uncertain significance 1 3 0 6 3
likely benign 0 0 6 0 23
benign 0 0 3 23 0

All variants with conflicting interpretations #

Total variants: 34
Download table as spreadsheet
HGVS dbSNP
NM_006767.4(LZTR1):c.-11G>A rs370616172
NM_006767.4(LZTR1):c.1018C>T (p.Arg340Ter) rs149850248
NM_006767.4(LZTR1):c.1333G>A (p.Val445Met) rs201070853
NM_006767.4(LZTR1):c.1353+8C>G rs75959644
NM_006767.4(LZTR1):c.1377C>T (p.His459=) rs752985853
NM_006767.4(LZTR1):c.1395G>A (p.Ala465=) rs142418387
NM_006767.4(LZTR1):c.1615+4C>T
NM_006767.4(LZTR1):c.1700G>A (p.Arg567His)
NM_006767.4(LZTR1):c.1723G>A (p.Asp575Asn) rs139368531
NM_006767.4(LZTR1):c.1749C>T (p.Cys583=) rs758399311
NM_006767.4(LZTR1):c.1943-256C>T rs761685529
NM_006767.4(LZTR1):c.1990G>A (p.Ala664Thr) rs140874089
NM_006767.4(LZTR1):c.2007C>T (p.Ile669=) rs138664443
NM_006767.4(LZTR1):c.201-8C>T rs183476594
NM_006767.4(LZTR1):c.2022C>T (p.Asp674=) rs145303406
NM_006767.4(LZTR1):c.2062C>T (p.Arg688Cys) rs587777178
NM_006767.4(LZTR1):c.2103C>T (p.Pro701=) rs139080986
NM_006767.4(LZTR1):c.2187C>T (p.Tyr729=) rs117346988
NM_006767.4(LZTR1):c.2190C>T (p.Gly730=) rs144092577
NM_006767.4(LZTR1):c.2232G>A (p.Ala744=) rs139261473
NM_006767.4(LZTR1):c.2355A>G (p.Ala785=) rs751681487
NM_006767.4(LZTR1):c.2373C>T (p.His791=) rs148993324
NM_006767.4(LZTR1):c.2407-2A>G rs1158550690
NM_006767.4(LZTR1):c.2463dup (p.Asp822fs) rs781251567
NM_006767.4(LZTR1):c.263+7G>A rs185749722
NM_006767.4(LZTR1):c.26G>C (p.Gly9Ala) rs756485244
NM_006767.4(LZTR1):c.369C>T (p.Ala123=)
NM_006767.4(LZTR1):c.453C>T (p.Asp151=) rs142421078
NM_006767.4(LZTR1):c.482del (p.Gln161fs)
NM_006767.4(LZTR1):c.543G>A (p.Thr181=) rs151294009
NM_006767.4(LZTR1):c.651+10_651+46del rs541944601
NM_006767.4(LZTR1):c.906G>A (p.Ala302=) rs143128466
NM_006767.4(LZTR1):c.945C>T (p.Asp315=) rs559942119
NM_006767.4(LZTR1):c.96T>C (p.His32=) rs372440263

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